Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS08860 Genome accession   NZ_CP107924
Coordinates   1937654..1938313 (-) Length   219 a.a.
NCBI ID   WP_328297909.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1932654..1943313
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS08830 (OG389_08840) - 1932855..1933625 (-) 771 WP_328297904.1 sulfite exporter TauE/SafE family protein -
  OG389_RS08835 (OG389_08845) - 1933724..1934704 (-) 981 WP_328297905.1 SPFH domain-containing protein -
  OG389_RS08840 (OG389_08850) - 1934819..1935250 (-) 432 WP_328297906.1 NfeD family protein -
  OG389_RS08845 (OG389_08855) - 1935316..1936110 (-) 795 WP_328297907.1 ABC transporter ATP-binding protein -
  OG389_RS08850 (OG389_08860) - 1936255..1937040 (+) 786 WP_328297908.1 hypothetical protein -
  OG389_RS08855 (OG389_08865) - 1937296..1937541 (-) 246 WP_328303624.1 chaplin -
  OG389_RS08860 (OG389_08870) vraR 1937654..1938313 (-) 660 WP_328297909.1 response regulator transcription factor Regulator
  OG389_RS08865 (OG389_08875) - 1938306..1939448 (-) 1143 WP_328297910.1 GAF domain-containing sensor histidine kinase -
  OG389_RS08870 (OG389_08880) - 1940316..1940990 (+) 675 WP_328297911.1 transglycosylase SLT domain-containing protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23573.86 Da        Isoelectric Point: 6.3894

>NTDB_id=649442 OG389_RS08860 WP_328297909.1 1937654..1938313(-) (vraR) [Streptomyces sp. NBC_00435]
MADTPGRSGRIRVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGDEGIDRAGELRPDVILMDIKMPGTDGIEALRRLRG
LDNPARVLIVTSFTEQRTVIPALRAGAAGYVYKDIDPDALATAIRSVHAGHVLLQPEVAGALLSGEGAGPSPGRGGNLTD
REREVLHHIADGRSNREIARVLVLSEKTVKTHVSNILMKLDLADRTQAALWAVRHGVAG

Nucleotide


Download         Length: 660 bp        

>NTDB_id=649442 OG389_RS08860 WP_328297909.1 1937654..1938313(-) (vraR) [Streptomyces sp. NBC_00435]
GTGGCTGACACCCCGGGCCGTAGCGGCCGCATCAGGGTCCTGCTCGTGGACGACCACCAGGTCGTGCGGCGGGGCCTGCG
CACCTTCCTGGAGGTCCAGGACGACATCGAGGTGGTCGGCGAGGCCGCCGACGGCGACGAGGGCATCGACCGCGCCGGGG
AACTGCGCCCCGACGTGATCCTCATGGACATCAAGATGCCGGGCACTGACGGAATCGAGGCCCTGCGCAGACTGCGCGGG
CTGGACAACCCGGCGCGCGTGTTGATCGTCACGAGCTTCACCGAGCAGCGGACCGTGATCCCCGCCCTGCGCGCGGGCGC
CGCGGGCTACGTGTACAAGGACATAGACCCCGACGCACTCGCCACCGCCATCCGCTCGGTCCACGCCGGCCACGTCCTCC
TCCAGCCGGAGGTGGCCGGAGCGCTGCTCTCCGGGGAGGGCGCGGGTCCGTCACCGGGCCGCGGCGGCAACCTCACGGAC
CGCGAACGCGAGGTACTGCACCACATAGCGGACGGCCGTTCGAACCGGGAGATCGCCCGGGTGCTGGTCCTGTCGGAGAA
GACGGTCAAGACGCACGTCTCGAACATCCTGATGAAGCTGGACCTGGCGGACCGCACCCAGGCGGCGCTGTGGGCGGTCA
GACACGGTGTCGCGGGGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(13-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.712

94.977

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

38.739

100

0.393