Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   L2Z42_RS14585 Genome accession   NZ_CP091335
Coordinates   3019583..3020401 (+) Length   272 a.a.
NCBI ID   WP_000149378.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC17978-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3014583..3025401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z42_RS14550 (L2Z42_14550) - 3015165..3015295 (-) 131 Protein_2834 hypothetical protein -
  L2Z42_RS14555 (L2Z42_14555) rpoZ 3015334..3015612 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z42_RS14560 (L2Z42_14560) gmk 3015685..3016314 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z42_RS14565 (L2Z42_14565) ispH 3016437..3017387 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z42_RS14570 (L2Z42_14570) fimU 3017557..3018030 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  L2Z42_RS14575 (L2Z42_14575) pilV 3018024..3018584 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z42_RS14580 (L2Z42_14580) pilW 3018585..3019586 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  L2Z42_RS14585 (L2Z42_14585) pilX 3019583..3020401 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  L2Z42_RS14590 (L2Z42_14590) pilY1 3020413..3024267 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  L2Z42_RS14595 (L2Z42_14595) pilY2 3024280..3024762 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  L2Z42_RS14600 (L2Z42_14600) pilE 3024759..3025184 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28862.69 Da        Isoelectric Point: 5.6905

>NTDB_id=649384 L2Z42_RS14585 WP_000149378.1 3019583..3020401(+) (pilX) [Acinetobacter baumannii strain ATCC17978-VUB]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMTDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=649384 L2Z42_RS14585 WP_000149378.1 3019583..3020401(+) (pilX) [Acinetobacter baumannii strain ATCC17978-VUB]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGACTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989