Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OHB13_RS14670 Genome accession   NZ_CP107921
Coordinates   3293286..3294266 (-) Length   326 a.a.
NCBI ID   WP_328377393.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00440     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3288286..3299266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB13_RS14655 (OHB13_14670) - 3289475..3290221 (+) 747 WP_266856024.1 DUF6227 family protein -
  OHB13_RS14660 (OHB13_14675) - 3290416..3291399 (-) 984 WP_266856022.1 YafY family protein -
  OHB13_RS14665 (OHB13_14680) - 3291639..3293138 (+) 1500 WP_328380288.1 MFS transporter -
  OHB13_RS14670 (OHB13_14685) rpoS 3293286..3294266 (-) 981 WP_328377393.1 sigma-70 family RNA polymerase sigma factor Regulator
  OHB13_RS14675 (OHB13_14690) - 3294450..3294977 (+) 528 WP_266855999.1 GNAT family N-acetyltransferase -
  OHB13_RS14680 (OHB13_14695) - 3295162..3295941 (-) 780 WP_328377394.1 class III extradiol ring-cleavage dioxygenase -
  OHB13_RS14685 (OHB13_14700) - 3296033..3296548 (+) 516 WP_266855995.1 MarR family transcriptional regulator -
  OHB13_RS14690 (OHB13_14705) - 3296694..3298223 (-) 1530 WP_328377395.1 MFS transporter -
  OHB13_RS14695 (OHB13_14710) - 3298575..3299213 (-) 639 WP_266855992.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 36475.12 Da        Isoelectric Point: 4.9545

>NTDB_id=649385 OHB13_RS14670 WP_328377393.1 3293286..3294266(-) (rpoS) [Streptomyces sp. NBC_00440]
MATRAVARRSDRASSVRAVGGEIADRDLVGMYLDEIARTPLLDAEKEVELSQTIEAGVYAQQVLDGSVQSEAGGASHEEL
EALVAAGERAKDVFIRSNLRLVVAVARRYPRAGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIAD
QSRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHEEIAAELDAKPQRVSDVLDWARDPVSLNMPVDDQGETQFGDLLED
TSAVSPEQSVMTLLRSEELDELIGRLDHRTASIIKMRFGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLELKKMADDV
GFDAAA

Nucleotide


Download         Length: 981 bp        

>NTDB_id=649385 OHB13_RS14670 WP_328377393.1 3293286..3294266(-) (rpoS) [Streptomyces sp. NBC_00440]
ATGGCAACCCGTGCCGTCGCCCGTCGATCCGACCGGGCAAGCAGCGTTCGCGCCGTAGGCGGGGAGATCGCCGACCGCGA
CCTGGTCGGCATGTACCTCGACGAAATCGCACGTACGCCACTGCTCGACGCCGAAAAAGAGGTCGAGCTGTCCCAGACCA
TCGAGGCCGGGGTGTACGCCCAGCAGGTTCTTGACGGTTCCGTGCAGAGTGAGGCGGGTGGGGCCTCGCATGAGGAGCTG
GAGGCGCTGGTTGCCGCCGGGGAGCGCGCCAAGGACGTCTTCATCCGGTCCAACCTGCGGCTGGTCGTCGCTGTGGCCCG
CCGCTATCCGCGAGCCGGTCTGCCGCTGCTCGACCTGATCCAGGAGGGCAACGCGGGTCTGGTGCGCGCGGTCGAGAAGT
TCGACTACGCCAAGGGCTTCAAGTTCTCCACGTATGCGACCTGGTGGATCCGGCAGGCCATCACCCGGTCGATAGCCGAT
CAGTCGCGCACCATCCGGCTCCCTGTCCACCTGGTGGAGGAGCTGGGCCGGATCCGCCGTGTCCAGCGCGAGTTCAACCG
CGAGCACGGCCGCGACCCGGAGCACGAGGAGATCGCCGCCGAGCTGGACGCCAAGCCGCAGCGTGTGAGCGATGTGCTGG
ACTGGGCCCGCGACCCGGTCAGTCTGAACATGCCGGTGGACGACCAGGGCGAGACGCAGTTCGGTGACCTCCTGGAGGAC
ACGTCGGCGGTGTCGCCCGAGCAGTCCGTGATGACGCTGCTGCGCAGCGAGGAGCTCGACGAACTGATCGGCAGGCTCGA
TCACCGCACCGCTTCGATCATCAAGATGCGCTTCGGTATCGACGACGGCCGGGAGCGGACGCTGACCGAGGTCGGCAAGG
AGCACGGGCTGACACGTGAGCGGATCCGCCAGATCGAGAAGCACGCGCTGCTCGAACTGAAGAAGATGGCCGACGACGTG
GGCTTCGACGCGGCGGCGTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(94-163)

Sigma-70, region 4 (Sigma70_r4)

(263-315)

Sigma-70 region 3 (Sigma70_r3)

(173-249)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(27-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

92.025

0.371