Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   L2Z42_RS14575 Genome accession   NZ_CP091335
Coordinates   3018024..3018584 (+) Length   186 a.a.
NCBI ID   WP_002194578.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain ATCC17978-VUB     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3013024..3023584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z42_RS14550 (L2Z42_14550) - 3015165..3015295 (-) 131 Protein_2834 hypothetical protein -
  L2Z42_RS14555 (L2Z42_14555) rpoZ 3015334..3015612 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  L2Z42_RS14560 (L2Z42_14560) gmk 3015685..3016314 (-) 630 WP_000015937.1 guanylate kinase -
  L2Z42_RS14565 (L2Z42_14565) ispH 3016437..3017387 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  L2Z42_RS14570 (L2Z42_14570) fimU 3017557..3018030 (+) 474 WP_001214058.1 GspH/FimT family pseudopilin Machinery gene
  L2Z42_RS14575 (L2Z42_14575) pilV 3018024..3018584 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  L2Z42_RS14580 (L2Z42_14580) pilW 3018585..3019586 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  L2Z42_RS14585 (L2Z42_14585) pilX 3019583..3020401 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 186 a.a.        Molecular weight: 20162.12 Da        Isoelectric Point: 8.2247

>NTDB_id=649382 L2Z42_RS14575 WP_002194578.1 3018024..3018584(+) (pilV) [Acinetobacter baumannii strain ATCC17978-VUB]
MLMHHYKQKAQAGVGLLEVLVALILLAIGVLGYVALQLRAMDASSEALSKSQAILVMRGLAENIRTNSTQASQYPTFVRS
YSNYTSDTPAPTSCFNSLCTASQLAQFDAYQAARNANQLGMRITMSNCPGVTNTMVQQRQCLFVFWGKTAPVITTNGTNT
SVDVSSCMSNNGVYVNNSTCLMMEAY

Nucleotide


Download         Length: 561 bp        

>NTDB_id=649382 L2Z42_RS14575 WP_002194578.1 3018024..3018584(+) (pilV) [Acinetobacter baumannii strain ATCC17978-VUB]
TTGTTAATGCATCACTATAAGCAAAAAGCCCAAGCTGGGGTGGGCTTACTCGAAGTTTTGGTTGCCTTAATTTTACTTGC
TATTGGAGTTTTAGGTTATGTTGCCTTGCAGCTAAGAGCTATGGATGCATCTTCAGAAGCATTAAGTAAATCTCAAGCCA
TTCTAGTGATGAGGGGATTAGCAGAAAATATCCGTACAAATAGTACTCAAGCTAGCCAGTATCCTACATTTGTACGTAGT
TATAGCAACTATACATCTGATACTCCTGCACCCACGTCATGTTTTAACTCTCTATGTACTGCCTCCCAACTTGCTCAATT
TGATGCCTATCAAGCAGCTAGAAATGCTAATCAACTGGGTATGAGAATTACGATGTCAAATTGCCCTGGCGTTACAAATA
CAATGGTGCAACAACGCCAGTGCCTATTTGTCTTTTGGGGTAAAACTGCGCCAGTGATTACTACAAATGGAACAAATACT
AGTGTGGATGTTTCAAGTTGTATGAGTAATAACGGTGTTTACGTGAATAATTCAACTTGCTTAATGATGGAGGCATATTA
A

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(9-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Acinetobacter baumannii D1279779

100

100

1
  pilV Acinetobacter baylyi ADP1

41.398

100

0.414