Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   L2Z44_RS13865 Genome accession   NZ_CP091333
Coordinates   2874363..2874773 (-) Length   136 a.a.
NCBI ID   WP_075400716.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2869363..2879773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS13835 (L2Z44_13835) - 2869449..2869718 (-) 270 WP_000567533.1 HPr family phosphocarrier protein -
  L2Z44_RS13840 (L2Z44_13840) rapZ 2869715..2870566 (-) 852 WP_000821671.1 RNase adapter RapZ -
  L2Z44_RS13845 (L2Z44_13845) panC 2870589..2871437 (-) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  L2Z44_RS13850 (L2Z44_13850) panB 2871441..2872250 (-) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  L2Z44_RS13855 (L2Z44_13855) folK 2872296..2872778 (-) 483 WP_000219215.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  L2Z44_RS13860 (L2Z44_13860) pcnB 2872775..2874238 (-) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  L2Z44_RS13865 (L2Z44_13865) comEA 2874363..2874773 (-) 411 WP_075400716.1 ComEA family DNA-binding protein Machinery gene
  L2Z44_RS13870 (L2Z44_13870) mazG 2874742..2875548 (-) 807 WP_000359489.1 nucleoside triphosphate pyrophosphohydrolase -
  L2Z44_RS13875 (L2Z44_13875) - 2875660..2876433 (+) 774 WP_000682841.1 SDR family oxidoreductase -
  L2Z44_RS13880 (L2Z44_13880) - 2876478..2878784 (-) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15696.97 Da        Isoelectric Point: 10.3828

>NTDB_id=649269 L2Z44_RS13865 WP_075400716.1 2874363..2874773(-) (comEA) [Acinetobacter baumannii strain DSM30011-VUB]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKVKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=649269 L2Z44_RS13865 WP_075400716.1 2874363..2874773(-) (comEA) [Acinetobacter baumannii strain DSM30011-VUB]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCTCAATCTTTTGATCAAAACTTTCAAGAATGGAAGGTTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii D1279779

97.059

100

0.971
  comEA Acinetobacter baumannii strain A118

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404