Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO27_RS18650 Genome accession   NZ_CP107917
Coordinates   4190567..4191241 (-) Length   224 a.a.
NCBI ID   WP_328425353.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4185567..4196241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS18630 (OHO27_18635) - 4186480..4187073 (-) 594 WP_328425345.1 Uma2 family endonuclease -
  OHO27_RS18635 (OHO27_18640) - 4187162..4188382 (-) 1221 WP_328425347.1 cytochrome P450 -
  OHO27_RS18640 (OHO27_18645) vraR 4188430..4189095 (-) 666 WP_328425349.1 response regulator transcription factor Regulator
  OHO27_RS18645 (OHO27_18650) - 4189092..4190432 (-) 1341 WP_328425351.1 histidine kinase -
  OHO27_RS18650 (OHO27_18655) vraR 4190567..4191241 (-) 675 WP_328425353.1 response regulator transcription factor Regulator
  OHO27_RS18655 (OHO27_18660) - 4191238..4192509 (-) 1272 WP_328425355.1 sensor histidine kinase -
  OHO27_RS18660 (OHO27_18665) - 4192718..4193959 (-) 1242 WP_328425357.1 acyltransferase -
  OHO27_RS18665 (OHO27_18670) - 4193952..4195157 (-) 1206 WP_328425359.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24293.15 Da        Isoelectric Point: 4.9728

>NTDB_id=649169 OHO27_RS18650 WP_328425353.1 4190567..4191241(-) (vraR) [Streptomyces sp. NBC_00443]
MTSSPIRVLIADDQQMVRQGFTVLLNTKPDIDVIGQAVDGLDAVEKVADLLPDVVLMDIRMPELGGIEATRRITAATPQI
KVLVLTTFDLDEYVYEALHAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIVEFSRLVKRPRAPLKERVGDLT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=649169 OHO27_RS18650 WP_328425353.1 4190567..4191241(-) (vraR) [Streptomyces sp. NBC_00443]
ATGACGAGCAGCCCCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGATTCACCGTGCTGCTCAACAC
CAAGCCCGACATCGACGTGATCGGCCAGGCGGTCGACGGCCTGGACGCGGTGGAGAAGGTCGCCGACCTTCTCCCCGACG
TCGTGCTGATGGACATCCGCATGCCCGAACTCGGCGGCATCGAGGCCACCCGCCGCATCACCGCCGCGACACCGCAGATC
AAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCATGCGGGCGCCTCGGGCTTCCTCCT
CAAGGACGCCTCCGCCGACCAGCTGGCCGAGGCGGTACGGGTCGTGGCGGCCGGCGACGCCCTGCTCGCGCCCGGCATCA
CCCGGCGGCTGATCGTCGAGTTCTCCCGCCTGGTCAAGCGGCCCCGCGCCCCACTAAAGGAACGTGTCGGCGACCTGACC
GAACGCGAGACGGAGGTCCTCGCGCTGATCGCGCAGGGGCTTTCGAACGCGGAGATCGCCGAGCGCCTCGTCGTGGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGGGACCGTACGCAGGCGGCGGTGTTCGCGT
ACGAATCGGGGCTGGTGCGGCCCTCCGGATACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.721

95.982

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.411