Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHO27_RS18640 Genome accession   NZ_CP107917
Coordinates   4188430..4189095 (-) Length   221 a.a.
NCBI ID   WP_328425349.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00443     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4183430..4194095
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHO27_RS18620 (OHO27_18625) - 4183926..4184846 (+) 921 WP_328425343.1 ABC transporter ATP-binding protein -
  OHO27_RS18625 (OHO27_18630) - 4184843..4186470 (+) 1628 Protein_3698 ABC transporter permease -
  OHO27_RS18630 (OHO27_18635) - 4186480..4187073 (-) 594 WP_328425345.1 Uma2 family endonuclease -
  OHO27_RS18635 (OHO27_18640) - 4187162..4188382 (-) 1221 WP_328425347.1 cytochrome P450 -
  OHO27_RS18640 (OHO27_18645) vraR 4188430..4189095 (-) 666 WP_328425349.1 response regulator transcription factor Regulator
  OHO27_RS18645 (OHO27_18650) - 4189092..4190432 (-) 1341 WP_328425351.1 histidine kinase -
  OHO27_RS18650 (OHO27_18655) vraR 4190567..4191241 (-) 675 WP_328425353.1 response regulator transcription factor Regulator
  OHO27_RS18655 (OHO27_18660) - 4191238..4192509 (-) 1272 WP_328425355.1 sensor histidine kinase -
  OHO27_RS18660 (OHO27_18665) - 4192718..4193959 (-) 1242 WP_328425357.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23933.60 Da        Isoelectric Point: 4.6608

>NTDB_id=649168 OHO27_RS18640 WP_328425349.1 4188430..4189095(-) (vraR) [Streptomyces sp. NBC_00443]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPELNGIEATREIVAADGAAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSITRRLITEFSKLSDSPRLMSSAHAAYGDLTE
RETEVLVLIAQGLSNSEIAERLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=649168 OHO27_RS18640 WP_328425349.1 4188430..4189095(-) (vraR) [Streptomyces sp. NBC_00443]
ATGACCATCCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTCGGCGAGGCGGTCAACGGACGGGAAGCGGTGGACCGGGTCCGCGAACTCGCCCCGGACGTCGTGCTGA
TGGACATCCGCATGCCGGAGCTGAACGGCATCGAGGCGACCCGGGAGATCGTCGCGGCCGACGGCGCGGCGAAGGTGCTG
GTGCTGACCACCTTCGACCTCGACGAGTACGTGTACCAGGCACTGCGCGCGGGAGCCTCGGGCTTCCTGCTCAAGGACGC
CTCGGCACGCCAACTCGCTGACGGAGTACGGGTGGTGGCGGCCGGCGAGGCCCTGCTCGCCCCCTCCATCACCCGGCGGC
TGATCACCGAGTTCTCCAAGCTGTCCGACTCCCCGCGTCTGATGTCGTCCGCGCACGCGGCGTACGGGGATCTGACCGAG
CGGGAGACGGAGGTGCTGGTGCTGATCGCGCAGGGCCTGTCGAACTCGGAGATAGCGGAGCGGTTGGTGGTCGCCGAGTC
GACGATCAAGACCCATGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGTACGCAGGCGGCGGTGTTCGCGTACG
AGGCGCGGCTGGTCACGCCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.578

98.643

0.43
  degU Bacillus subtilis subsp. subtilis str. 168

42.396

98.19

0.416