Detailed information NTG0648807

Bioinformatically predicted

Overview

• Name: epdL
• Type: Machinery gene
• Locus tag: L1S32_RS01145
• Genome accession: NZ_CP091277
• Coordinates: 238063..240627 (-)
• Length: 854 a.a.
• NCBI ID: WP_278155552.1
• Uniprot ID: -
• Organism: Methanogenium sp. S4BF
• Function: DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 233063..245627

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1S32_RS01120 (L1S32_01115)	-	233427..233885 (+)	459	WP_278157105.1	YkgJ family cysteine cluster protein	-
L1S32_RS01125 (L1S32_01120)	-	234115..235620 (-)	1506	WP_278155548.1	cobyric acid synthase	-
L1S32_RS01130 (L1S32_01125)	yciH	235785..236090 (+)	306	WP_278155549.1	stress response translation initiation inhibitor YciH	-
L1S32_RS01135 (L1S32_01130)	epdK	236135..237145 (-)	1011	WP_278155550.1	type II secretion system F family protein	Machinery gene
L1S32_RS01140 (L1S32_01135)	epdJ	237147..238070 (-)	924	WP_278155551.1	type II secretion system F family protein	Machinery gene
L1S32_RS01145 (L1S32_01140)	epdL	238063..240627 (-)	2565	WP_278155552.1	type II/IV secretion system ATPase subunit	Machinery gene
L1S32_RS01150 (L1S32_01145)	-	241208..241819 (-)	612	WP_278155553.1	hypothetical protein	-
L1S32_RS01155 (L1S32_01150)	-	241852..242511 (-)	660	WP_278155554.1	roadblock/LC7 domain-containing protein	-
L1S32_RS01160 (L1S32_01155)	-	242517..242864 (-)	348	WP_278155555.1	roadblock/LC7 domain-containing protein	-
L1S32_RS01165 (L1S32_01160)	-	242857..244275 (-)	1419	WP_278155556.1	Ni/Fe hydrogenase subunit alpha	-
L1S32_RS01170 (L1S32_01165)	-	244272..245192 (-)	921	WP_278155557.1	F420-nonreducing hydrogenase	-

Sequence

Protein

• Length: 854 a.a.
• Molecular weight: 96613.10 Da
• Isoelectric Point: 4.4783

>NTDB_id=648807 L1S32_RS01145 WP_278155552.1 238063..240627(-) (epdL) [Methanogenium sp. S4BF]
MIPEAGEEKSDDTTSTGDTGIFTPQMENDTEIPEFQVENTPDDYSGDDKNEPESPSHLNSLIRSLRNETPEDIPDEIPTV
MEEAKSSHLDSLIADIQENTTFSVGEDSSGKPDSESEKKIDGIISELLNKKEEYPEADYFGGEPDESKAGELSSIIQEIQ
NSETAGTERKPQRRPDDIINELVNVYDEAEPAPGINQPQNSTTRITRIIEEISSEGNKNIRKEQLEIRPETRDSHSELTG
RRKIRRDGIISAEEAANFSDQILSGGAELDLEEFHVSARAHNFEMSNRKEIFAALDGIAEGDLERLDLSKLKPVEYVPEE
DTAREQKKKRFGQGIFGKIMGRVVEYDPAIHGSLVDLSHDSGEGIEEIELYPVNEPYAYIRIIFDHNTHEYLYTVIEPEL
SEGENVLLQELTQRLFETLDISTKDLTKERARATLTEAVDLIIFDYGIKLDPVSREKILYHIQKNFIGDGRIDAIMHDKY
IEDISCDGINAPIFVFHSNYESIQTNLTYTRPDDLDSFVTKLAQRAGKYISIAEPMLDATMADGSRIQMTLGHEVTAHGS
TFTIRKFKDEPITPTDLIEWGTYSPLSIAFLWLAVENGKSCIFAGGTASGKTTSLNAISLFIPPLAKIVTLEDTRELKLP
HKNWIPSITRESFDSGGKGSIDMYELLRAALRQRPEYILVGEVRGKEAQTLFQAMSTGHVTYATTHADSVASVVHRFENP
PMDVPRNMLSALDLVSVQVQARFGGQRIRRNKTLIEILDIDPRTNELITNEVFKWNAATDEIRFSGKSYILEDIMEGKGW
SDTRMREELKRRQEILEWMRLKKIRHFQEVGKVLLSYYRNPETVMELVRSDLYE

Nucleotide

• Length: 2565 bp

>NTDB_id=648807 L1S32_RS01145 WP_278155552.1 238063..240627(-) (epdL) [Methanogenium sp. S4BF]
ATGATTCCGGAAGCCGGTGAAGAGAAATCCGATGATACAACAAGTACCGGGGATACGGGGATATTCACACCTCAGATGGA
GAATGATACCGAAATACCAGAATTCCAGGTAGAAAATACCCCGGATGATTATTCAGGAGACGACAAGAACGAACCAGAAT
CTCCGTCACATCTGAATTCACTCATCCGTTCACTCCGGAATGAAACACCGGAAGATATTCCGGATGAAATACCGACTGTC
ATGGAGGAAGCAAAAAGTTCTCATCTTGATTCACTGATTGCTGACATTCAGGAGAATACCACTTTTTCAGTCGGAGAAGA
CTCTTCAGGAAAGCCTGACAGCGAATCTGAAAAGAAAATTGATGGAATAATCAGTGAATTGCTGAATAAGAAAGAGGAGT
ATCCTGAAGCAGATTATTTTGGTGGTGAACCGGATGAATCAAAAGCAGGTGAACTCAGCTCAATCATCCAGGAGATACAG
AATTCAGAAACAGCCGGCACTGAGAGAAAACCCCAGCGGAGACCGGATGATATCATTAACGAACTGGTGAATGTGTATGA
TGAAGCAGAACCGGCACCTGGAATAAATCAGCCCCAAAATTCAACAACAAGAATTACACGGATAATTGAAGAGATTTCAA
GTGAAGGAAATAAAAATATCCGCAAAGAACAACTTGAAATCAGACCGGAAACCAGAGACTCACATTCAGAACTGACAGGT
AGGAGAAAAATACGGAGAGACGGAATAATTAGTGCAGAAGAGGCAGCAAACTTTTCAGATCAGATTCTCTCAGGTGGTGC
TGAATTAGATCTCGAGGAATTCCACGTATCAGCCCGTGCTCACAATTTTGAGATGAGTAACCGAAAAGAAATCTTTGCTG
CACTGGATGGTATTGCTGAGGGTGATCTGGAGAGACTCGATTTATCAAAGTTAAAACCGGTTGAATATGTTCCGGAAGAA
GACACCGCCAGGGAACAAAAAAAGAAAAGATTTGGTCAGGGTATTTTTGGAAAAATTATGGGCAGGGTTGTGGAATATGA
CCCCGCCATCCATGGGTCCCTCGTCGATCTCTCACATGACAGTGGAGAGGGAATCGAAGAAATCGAATTATACCCGGTAA
ATGAACCATACGCCTATATACGCATCATTTTTGACCACAACACCCATGAGTATCTCTATACGGTGATTGAACCTGAACTC
TCTGAAGGAGAAAATGTACTGCTGCAGGAACTGACACAGAGACTGTTTGAGACACTGGACATCAGCACCAAGGATCTCAC
AAAAGAGCGGGCTCGTGCTACCCTGACAGAGGCGGTTGACCTCATTATTTTTGATTACGGGATAAAACTTGACCCGGTAT
CACGGGAAAAAATCCTCTATCATATTCAAAAAAATTTCATTGGAGACGGGCGTATTGACGCCATTATGCATGACAAATAT
ATTGAGGATATTTCCTGTGATGGAATAAATGCTCCCATATTTGTATTCCATTCAAATTATGAATCGATCCAGACAAACCT
TACATATACACGCCCTGATGATCTGGATTCATTTGTAACCAAACTTGCCCAGCGTGCGGGAAAGTACATCTCAATTGCTG
AACCGATGCTTGATGCAACGATGGCAGACGGGTCACGTATTCAGATGACACTGGGCCATGAAGTAACGGCCCATGGTTCA
ACATTCACCATCCGTAAATTTAAGGACGAACCGATCACACCAACAGATCTCATTGAATGGGGTACATATTCCCCACTTTC
TATTGCATTTCTGTGGCTCGCTGTGGAAAACGGAAAATCCTGTATATTTGCAGGAGGGACCGCTTCCGGAAAGACTACAT
CCCTGAATGCAATATCACTGTTTATTCCGCCTCTGGCAAAGATTGTCACACTTGAAGATACCAGGGAACTCAAACTCCCC
CACAAGAACTGGATCCCTTCCATTACCAGGGAATCGTTTGACAGCGGGGGTAAAGGCTCAATTGATATGTATGAACTGCT
TCGTGCAGCACTCCGTCAGCGCCCCGAATACATCCTCGTTGGTGAAGTGCGTGGCAAAGAGGCACAGACCCTCTTCCAGG
CCATGAGCACCGGTCACGTAACCTATGCAACGACACACGCAGATTCTGTTGCCAGTGTCGTTCACCGATTTGAAAACCCT
CCCATGGATGTACCCCGGAATATGCTGAGTGCCCTTGATCTGGTGAGCGTTCAGGTACAGGCACGGTTTGGCGGTCAGAG
GATTCGCCGAAATAAAACACTCATTGAAATCCTCGATATTGACCCCCGAACAAATGAACTGATCACCAATGAAGTGTTCA
AATGGAATGCGGCCACGGATGAGATACGTTTCTCCGGAAAATCCTACATTCTGGAAGATATCATGGAAGGAAAAGGGTGG
AGTGATACCCGTATGCGGGAAGAACTCAAACGGCGCCAGGAAATTCTGGAATGGATGCGTTTAAAAAAGATCCGTCACTT
CCAGGAAGTCGGAAAGGTGCTGCTCTCCTATTACCGCAATCCGGAAACAGTGATGGAACTTGTCAGGAGTGATCTCTATG
AATAG

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (479-731)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
epdL	Methanoculleus thermophilus strain DSM 2373	68.464	71.663	0.491