Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   L1S32_RS01135 Genome accession   NZ_CP091277
Coordinates   236135..237145 (-) Length   336 a.a.
NCBI ID   WP_278155550.1    Uniprot ID   -
Organism   Methanogenium sp. S4BF     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231135..242145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S32_RS01110 (L1S32_01105) - 231334..232119 (+) 786 WP_278155546.1 CBS domain-containing protein -
  L1S32_RS01115 (L1S32_01110) - 232116..233297 (-) 1182 WP_278155547.1 NDP-sugar synthase -
  L1S32_RS01120 (L1S32_01115) - 233427..233885 (+) 459 WP_278157105.1 YkgJ family cysteine cluster protein -
  L1S32_RS01125 (L1S32_01120) - 234115..235620 (-) 1506 WP_278155548.1 cobyric acid synthase -
  L1S32_RS01130 (L1S32_01125) yciH 235785..236090 (+) 306 WP_278155549.1 stress response translation initiation inhibitor YciH -
  L1S32_RS01135 (L1S32_01130) epdK 236135..237145 (-) 1011 WP_278155550.1 type II secretion system F family protein Machinery gene
  L1S32_RS01140 (L1S32_01135) epdJ 237147..238070 (-) 924 WP_278155551.1 type II secretion system F family protein Machinery gene
  L1S32_RS01145 (L1S32_01140) epdL 238063..240627 (-) 2565 WP_278155552.1 type II/IV secretion system ATPase subunit Machinery gene
  L1S32_RS01150 (L1S32_01145) - 241208..241819 (-) 612 WP_278155553.1 hypothetical protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37229.34 Da        Isoelectric Point: 5.2080

>NTDB_id=648805 L1S32_RS01135 WP_278155550.1 236135..237145(-) (epdK) [Methanogenium sp. S4BF]
MKIFDTKKTENQPLDAPSEIQRDEEIIARVEERHRSEEGVGKFMRHPIQMLTEKPVNILILTIPVAIIVFVIGLILQVSR
YGVFLALATTGVDDYFLLAVLIATVPLAVLDLKYSMRMRNLNISLPNFFRDVAGMNESGMTLPNAIHVVSEGEYGSLTQY
VKKLDAEMSWNIPFVDAIYQFGERIGTPLAQRSVDLIAKASRAGGDVSEVLRAAANDSFEFVNLETERRNNMLIYVIIVL
VSYLVFLFVIAVMTGTFLETMAQAGEAVSQSGSGSTTFGSTIDMDFYRRLFLHASVIQGFFSGLVAGQMGEGRAVAGLKY
SVVMVVIGWVAFRLFI

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=648805 L1S32_RS01135 WP_278155550.1 236135..237145(-) (epdK) [Methanogenium sp. S4BF]
ATGAAAATATTTGATACGAAAAAAACGGAAAATCAACCGCTCGATGCACCATCGGAAATTCAGAGAGATGAAGAAATAAT
TGCACGGGTGGAAGAACGGCACCGGTCAGAGGAAGGGGTGGGCAAATTCATGCGTCATCCCATTCAGATGCTCACAGAAA
AACCGGTCAATATTCTCATCCTCACAATACCGGTTGCAATAATTGTCTTTGTTATCGGACTGATCCTGCAGGTGAGTAGA
TATGGAGTGTTTCTTGCACTGGCAACAACAGGCGTTGATGATTATTTCCTTCTTGCAGTGCTGATTGCAACTGTTCCCCT
GGCAGTACTGGATCTGAAATACTCAATGAGAATGAGAAATCTAAATATATCACTGCCAAACTTCTTCCGGGACGTCGCAG
GAATGAATGAAAGCGGGATGACCCTCCCAAATGCGATTCACGTTGTTTCAGAAGGTGAATATGGCTCCCTGACCCAGTAC
GTCAAAAAACTTGATGCAGAGATGTCATGGAATATTCCCTTCGTCGATGCAATCTACCAGTTTGGGGAACGAATAGGTAC
ACCACTTGCACAGAGAAGCGTTGATCTCATCGCAAAAGCAAGTCGTGCGGGCGGCGATGTGAGTGAAGTCCTGCGTGCTG
CGGCAAATGACAGTTTTGAATTTGTCAATCTCGAAACAGAACGACGCAATAATATGCTCATCTATGTTATTATCGTGCTC
GTATCCTACCTTGTCTTCCTCTTCGTGATCGCGGTGATGACGGGAACGTTCCTCGAGACAATGGCACAGGCTGGTGAGGC
AGTGTCACAGTCAGGAAGTGGCAGCACAACATTTGGATCTACCATTGATATGGACTTTTACCGGCGGCTCTTCCTCCATG
CATCGGTAATTCAGGGATTTTTCTCAGGTCTTGTCGCTGGACAGATGGGTGAAGGGCGTGCAGTTGCAGGGCTAAAGTAC
TCAGTTGTAATGGTTGTTATTGGATGGGTTGCATTCAGACTGTTTATCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(128-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanoculleus thermophilus strain DSM 2373

58.842

92.56

0.545