Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdJ   Type   Machinery gene
Locus tag   L1S32_RS01140 Genome accession   NZ_CP091277
Coordinates   237147..238070 (-) Length   307 a.a.
NCBI ID   WP_278155551.1    Uniprot ID   -
Organism   Methanogenium sp. S4BF     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232147..243070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S32_RS01120 (L1S32_01115) - 233427..233885 (+) 459 WP_278157105.1 YkgJ family cysteine cluster protein -
  L1S32_RS01125 (L1S32_01120) - 234115..235620 (-) 1506 WP_278155548.1 cobyric acid synthase -
  L1S32_RS01130 (L1S32_01125) yciH 235785..236090 (+) 306 WP_278155549.1 stress response translation initiation inhibitor YciH -
  L1S32_RS01135 (L1S32_01130) epdK 236135..237145 (-) 1011 WP_278155550.1 type II secretion system F family protein Machinery gene
  L1S32_RS01140 (L1S32_01135) epdJ 237147..238070 (-) 924 WP_278155551.1 type II secretion system F family protein Machinery gene
  L1S32_RS01145 (L1S32_01140) epdL 238063..240627 (-) 2565 WP_278155552.1 type II/IV secretion system ATPase subunit Machinery gene
  L1S32_RS01150 (L1S32_01145) - 241208..241819 (-) 612 WP_278155553.1 hypothetical protein -
  L1S32_RS01155 (L1S32_01150) - 241852..242511 (-) 660 WP_278155554.1 roadblock/LC7 domain-containing protein -
  L1S32_RS01160 (L1S32_01155) - 242517..242864 (-) 348 WP_278155555.1 roadblock/LC7 domain-containing protein -

Sequence

Protein


Download         Length: 307 a.a.        Molecular weight: 34101.95 Da        Isoelectric Point: 5.1171

>NTDB_id=648806 L1S32_RS01140 WP_278155551.1 237147..238070(-) (epdJ) [Methanogenium sp. S4BF]
MNSYQRVCFNLLGERLKAKRDDYLFLRNDMMRARMTVPFEAYLATAYVTSILVGLVFGILIGSVTYIFNLPDLIVYYGNV
PDFIVALNPLKVLFGAAIVMIISLIVFGGITYAVFLIYPGIMAGERKRNIDATLPYAINYITAMSTAGITPAEVFRLLGQ
STIYGESAVEARYIAREIDIFGKDLLDALRIAGQYTPSSRMREFLQGASASISAGSNLTEYFRTKSEQYTRENRLEQKTF
LETLGLISESYVTALVAGTLFLIILQSIMSTISGETDPLFLYAVIYAIIPLGSIMFVILISSMTPEV

Nucleotide


Download         Length: 924 bp        

>NTDB_id=648806 L1S32_RS01140 WP_278155551.1 237147..238070(-) (epdJ) [Methanogenium sp. S4BF]
ATGAATAGTTATCAAAGGGTCTGTTTCAACCTTCTCGGGGAGCGTCTGAAGGCAAAACGGGATGACTATCTCTTTTTGCG
CAATGATATGATGCGGGCACGAATGACTGTACCGTTTGAAGCATATCTTGCAACGGCATACGTAACCTCTATCCTCGTGG
GATTGGTATTTGGAATTTTGATTGGCTCTGTCACATATATATTCAATCTTCCTGATCTTATCGTATATTATGGGAATGTG
CCTGACTTCATCGTTGCTCTGAATCCATTAAAAGTATTATTCGGTGCAGCAATCGTAATGATCATCAGCCTGATTGTATT
TGGAGGAATTACCTACGCAGTATTTCTTATATATCCCGGAATAATGGCGGGGGAGAGAAAAAGAAATATCGATGCAACAC
TTCCCTATGCAATTAATTACATCACCGCAATGTCAACAGCAGGAATTACTCCGGCAGAAGTATTCCGTCTGCTGGGACAG
AGCACAATATACGGGGAAAGTGCTGTTGAAGCACGATATATTGCACGAGAAATTGACATATTTGGAAAAGACCTGCTTGA
TGCCCTGAGAATTGCCGGCCAGTATACACCGAGCAGCAGAATGCGTGAATTCCTGCAGGGTGCTTCCGCAAGCATTTCAG
CCGGAAGTAACCTGACGGAATATTTCCGTACAAAATCAGAACAATATACCAGGGAGAACCGTCTTGAGCAGAAAACATTC
CTGGAAACACTGGGATTGATTTCAGAGTCATATGTGACAGCGCTCGTTGCAGGAACGCTCTTTCTCATAATCCTTCAGTC
GATTATGTCGACAATCAGTGGTGAGACAGATCCCCTGTTTCTGTATGCTGTAATTTATGCGATAATTCCACTGGGCAGTA
TCATGTTCGTGATTCTCATCAGTTCAATGACCCCGGAGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(138-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdJ Methanoculleus thermophilus strain DSM 2373

72.313

100

0.723