Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG828_RS23325 Genome accession   NZ_CP107905
Coordinates   5138180..5138854 (-) Length   224 a.a.
NCBI ID   WP_328502212.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00457     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5133180..5143854
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG828_RS23300 (OG828_23275) - 5133560..5134411 (+) 852 WP_328439471.1 GntR family transcriptional regulator -
  OG828_RS23305 (OG828_23280) - 5134438..5135265 (-) 828 WP_328502210.1 class I SAM-dependent methyltransferase -
  OG828_RS23310 (OG828_23285) - 5135338..5135940 (+) 603 WP_328439473.1 TetR/AcrR family transcriptional regulator -
  OG828_RS23315 (OG828_23290) vraR 5136053..5136718 (-) 666 WP_210580566.1 response regulator transcription factor Regulator
  OG828_RS23320 (OG828_23295) - 5136715..5138055 (-) 1341 WP_328502211.1 histidine kinase -
  OG828_RS23325 (OG828_23300) vraR 5138180..5138854 (-) 675 WP_328502212.1 response regulator transcription factor Regulator
  OG828_RS23330 (OG828_23305) - 5138851..5140191 (-) 1341 WP_328504921.1 sensor histidine kinase -
  OG828_RS23335 (OG828_23310) - 5140331..5141518 (-) 1188 WP_328504922.1 acyltransferase -
  OG828_RS23340 (OG828_23315) - 5141625..5142659 (-) 1035 WP_328502213.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24172.03 Da        Isoelectric Point: 5.1358

>NTDB_id=648602 OG828_RS23325 WP_328502212.1 5138180..5138854(-) (vraR) [Streptomyces sp. NBC_00457]
MTSGTIRVLIADDQQMVRQGFTVLLNTQPDIDVIGQAVDGMDAVAKVAELVPDVVLMDIRMPELSGIEATRRIVGVTPHI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADKLAEAIRVVAAGDALLAPGITRRLIAEFSRLGDKPRAPLKTRVGDLT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=648602 OG828_RS23325 WP_328502212.1 5138180..5138854(-) (vraR) [Streptomyces sp. NBC_00457]
ATGACGAGCGGCACCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCTCAACAC
CCAGCCCGACATCGACGTCATCGGCCAGGCGGTGGACGGTATGGACGCGGTCGCCAAGGTCGCCGAACTCGTCCCGGACG
TCGTCCTCATGGACATCCGTATGCCCGAACTCAGCGGCATCGAGGCCACCCGCCGCATCGTCGGCGTGACCCCGCACATC
AAGGTGCTCGTGCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCGCTGCGTGCCGGCGCGTCCGGGTTCCTGCT
GAAGGACGCCTCCGCCGACAAGCTCGCCGAGGCGATCCGGGTGGTGGCGGCCGGCGACGCGCTGCTCGCGCCCGGTATCA
CCCGGCGGTTGATCGCCGAGTTCTCCCGTCTCGGCGACAAGCCGCGTGCCCCGCTCAAGACCCGCGTCGGCGACCTGACC
GAGCGGGAGACGGAAGTGCTGGCGCTGATCGCGCAGGGTCTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGTCGCCGA
GCAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGTACGCAGGCGGCCGTGTTCGCGT
ACGAGTCGGGGCTGGTGAGGCCCTCGGGGTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

96.429

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

41.85

100

0.424