Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG870_RS25240 Genome accession   NZ_CP107902
Coordinates   5388569..5389234 (+) Length   221 a.a.
NCBI ID   WP_266518618.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5383569..5394234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG870_RS25220 (OG870_25200) - 5383735..5384916 (+) 1182 WP_266592410.1 acyltransferase -
  OG870_RS25225 (OG870_25205) - 5384957..5386393 (+) 1437 WP_266592412.1 sensor histidine kinase -
  OG870_RS25230 (OG870_25210) vraR 5386390..5387070 (+) 681 WP_266518613.1 response regulator transcription factor Regulator
  OG870_RS25235 (OG870_25215) - 5387205..5388572 (+) 1368 WP_266588832.1 histidine kinase -
  OG870_RS25240 (OG870_25220) vraR 5388569..5389234 (+) 666 WP_266518618.1 response regulator transcription factor Regulator
  OG870_RS25245 (OG870_25225) - 5389292..5390887 (-) 1596 WP_266839039.1 carboxylesterase family protein -
  OG870_RS25250 (OG870_25230) - 5390990..5391628 (-) 639 WP_266839037.1 GPP34 family phosphoprotein -
  OG870_RS25255 (OG870_25235) - 5391791..5392450 (-) 660 WP_266588838.1 response regulator transcription factor -
  OG870_RS25260 (OG870_25240) - 5392447..5393625 (-) 1179 WP_266839033.1 histidine kinase -
  OG870_RS25265 (OG870_25245) - 5393622..5394041 (-) 420 WP_266588842.1 ATP-binding protein -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23941.68 Da        Isoelectric Point: 4.7252

>NTDB_id=648412 OG870_RS25240 WP_266518618.1 5388569..5389234(+) (vraR) [Streptomyces sp. NBC_00461]
MTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPEMNGIEATREIVAADSPSKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPTVTKRLITEFSKLSTSPRLMQSAQAAYGDLTE
RETEVLVLIAQGLSNAEIAGRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=648412 OG870_RS25240 WP_266518618.1 5388569..5389234(+) (vraR) [Streptomyces sp. NBC_00461]
ATGACCATCCGCGTCCTGATCGCGGACGATCAGATGATGGTGCGCGAGGGCTTCTCGGTCCTGCTGAACGCGATGCCGGA
CATCGAGGTCGTGGGCGAGGCGGTCAACGGCCGCGAGGCGGTCGACCGCGTCCGTGAACTGGCCCCCGACGTGGTCCTGA
TGGACATCCGCATGCCCGAAATGAACGGCATCGAGGCGACCCGGGAGATCGTGGCCGCCGACAGCCCGTCGAAGGTCCTC
GTCCTCACGACCTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGC
CTCGGCCCGCCAACTCGCGGACGGCGTAAGGGTGGTGGCCTCCGGTGAGGCACTCCTCGCACCGACCGTCACCAAGCGGC
TGATCACGGAGTTCTCGAAGCTGTCCACGTCCCCTCGCCTCATGCAGTCCGCCCAGGCGGCGTACGGCGATCTGACCGAG
CGTGAGACGGAGGTCCTGGTCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGGGCGCCTCGTGGTCGCCGAGTC
GACGATCAAGACCCACGTCAGCCGCATCCTGGTCAAGCTGGGCCTCAGGGACCGCACACAGGCTGCGGTGTTCGCGTACG
AGGCGCGACTGGTGACACCGGGCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(158-212)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.662

99.095

0.452
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

98.19

0.421