Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG870_RS25230 Genome accession   NZ_CP107902
Coordinates   5386390..5387070 (+) Length   226 a.a.
NCBI ID   WP_266518613.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00461     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5381390..5392070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG870_RS25215 (OG870_25195) - 5382447..5383484 (+) 1038 WP_266588830.1 alpha/beta hydrolase -
  OG870_RS25220 (OG870_25200) - 5383735..5384916 (+) 1182 WP_266592410.1 acyltransferase -
  OG870_RS25225 (OG870_25205) - 5384957..5386393 (+) 1437 WP_266592412.1 sensor histidine kinase -
  OG870_RS25230 (OG870_25210) vraR 5386390..5387070 (+) 681 WP_266518613.1 response regulator transcription factor Regulator
  OG870_RS25235 (OG870_25215) - 5387205..5388572 (+) 1368 WP_266588832.1 histidine kinase -
  OG870_RS25240 (OG870_25220) vraR 5388569..5389234 (+) 666 WP_266518618.1 response regulator transcription factor Regulator
  OG870_RS25245 (OG870_25225) - 5389292..5390887 (-) 1596 WP_266839039.1 carboxylesterase family protein -
  OG870_RS25250 (OG870_25230) - 5390990..5391628 (-) 639 WP_266839037.1 GPP34 family phosphoprotein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24549.24 Da        Isoelectric Point: 4.8664

>NTDB_id=648411 OG870_RS25230 WP_266518613.1 5386390..5387070(+) (vraR) [Streptomyces sp. NBC_00461]
MTSSRSPIRVLIADDQQMVRQGFTVLLNTKADIEVVGQAVDGLDAVAKVAEFVPDVVLMDIRMPELDGIEATRRITGATP
HIKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIDQFSRLDGRPRTPLKERVGD
LTERETEVLALIAEGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=648411 OG870_RS25230 WP_266518613.1 5386390..5387070(+) (vraR) [Streptomyces sp. NBC_00461]
ATGACGAGCAGCCGTAGCCCCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCT
CAACACCAAAGCTGACATCGAGGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCCGTGGCCAAGGTCGCCGAGTTCGTCC
CGGACGTCGTCCTGATGGACATCCGGATGCCCGAGCTCGACGGTATCGAGGCCACCCGCCGCATCACCGGGGCGACGCCC
CACATCAAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGAAGCGCTGCGCGCGGGAGCGTCCGGGTT
CCTCCTGAAGGACGCGTCGGCGGACCAGCTGGCCGAGGCGGTGCGGGTGGTGGCGGCCGGCGACGCGCTGCTGGCACCGG
GCATCACCCGACGGCTGATCGACCAGTTCTCCCGCCTGGACGGCCGGCCTCGCACCCCCCTCAAGGAGCGGGTCGGCGAT
CTGACCGAGCGCGAGACGGAGGTCCTCGCACTGATCGCGGAGGGGTTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGT
CGCCGAGCAGACGGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGCTGGGCCTCAGGGACCGCACGCAGGCGGCGGTGT
TCGCGTACGAGTCGGGGCTGGTACGGCCGTCCGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.116

95.133

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

41.778

99.558

0.416