Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG210_RS22540 Genome accession   NZ_CP107896
Coordinates   5017471..5019444 (-) Length   657 a.a.
NCBI ID   WP_328326306.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00466 strain NBC 00466     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5012471..5024444
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG210_RS22525 (OG210_22525) - 5012771..5014033 (+) 1263 WP_328326312.1 FAD-dependent oxidoreductase -
  OG210_RS22530 (OG210_22530) dnaG 5014155..5016056 (+) 1902 WP_328326310.1 DNA primase -
  OG210_RS22535 (OG210_22535) - 5016222..5017412 (+) 1191 WP_371538483.1 sigma-70 family RNA polymerase sigma factor -
  OG210_RS22540 (OG210_22540) rcrQ 5017471..5019444 (-) 1974 WP_328326306.1 ABC transporter ATP-binding protein Regulator
  OG210_RS22545 (OG210_22545) rcrP 5019444..5021177 (-) 1734 WP_328326304.1 ABC transporter ATP-binding protein Regulator
  OG210_RS22550 (OG210_22550) - 5021324..5022805 (-) 1482 WP_328326302.1 FGGY family carbohydrate kinase -
  OG210_RS22555 (OG210_22555) - 5022836..5023135 (-) 300 WP_164258730.1 YtxH domain-containing protein -
  OG210_RS22575 (OG210_22575) - 5023665..5024417 (-) 753 WP_371540439.1 tyrosine-type recombinase/integrase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 70542.22 Da        Isoelectric Point: 5.9108

>NTDB_id=648285 OG210_RS22540 WP_328326306.1 5017471..5019444(-) (rcrQ) [Streptomyces sp. NBC_00466 strain NBC 00466]
MSGAGGRMMAGPTQKSMDFKGSGKRLLRQLAQDRAALFTMLLAVVGSVALSVVGPKILGRATDLIFAGIIGRHLPAGTTK
AQALKGLHARGQGAMADMLSGVDFTPGKGIDFTQVGEILLLALAAFGCAGLLMLVTTRLAARIINQAMFRMREEIQAKLS
RLPLSYFDRAKRGEVLSRTTNDVDNIGQTMQQTMGQLMNSLLTIIGVLAMMFWISWILALVALVTVPLSVLVATRVGKRS
QPQFVQQWKVTGKLNAHIEEMYTGHALVKIFGRQAESAEAFREQNDALYEAGFKAQFNSGIMQPLMMFVSNINYVLVAVI
GGLRVASGSLSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERIFELLDAEEQAPDADSSGTKSDAVSDAVPGAR
VADRPVAVRGSISLEKVAFRYEADKPLIDDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDIASMT
REELRSGIGMVLQDTWLFGGTIAENIAYGSSRAVTREEVEEAARAAHADRFIRTLPEGYETVIDDEGTGVSAGEKQLITI
ARAFLSDPVILVLDEATSSVDTRTEVLIQQAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGSHEELLAADGA
YARLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=648285 OG210_RS22540 WP_328326306.1 5017471..5019444(-) (rcrQ) [Streptomyces sp. NBC_00466 strain NBC 00466]
ATGTCCGGTGCTGGTGGACGCATGATGGCAGGACCGACCCAGAAGTCCATGGACTTCAAGGGGTCGGGCAAGCGGCTGCT
GCGGCAGCTGGCACAGGACCGTGCCGCGCTGTTCACGATGCTGCTGGCGGTCGTCGGCAGCGTCGCGCTCTCGGTCGTCG
GACCGAAGATCCTCGGCCGGGCGACCGACCTGATCTTCGCCGGGATCATCGGCCGGCACCTGCCCGCGGGCACGACCAAG
GCACAGGCCCTGAAGGGCCTGCACGCCAGGGGTCAGGGCGCGATGGCCGACATGCTCTCCGGCGTGGACTTCACGCCGGG
CAAGGGCATCGACTTCACCCAGGTGGGAGAGATCCTGCTGCTCGCGCTGGCGGCCTTCGGCTGCGCGGGTCTGCTGATGC
TCGTCACCACCCGGCTCGCGGCCCGGATCATCAACCAGGCCATGTTCCGGATGCGTGAGGAGATCCAGGCGAAGCTCTCG
CGGCTGCCGCTGTCGTACTTCGACAGGGCGAAGCGCGGTGAGGTGCTCAGCCGGACGACGAACGACGTCGACAACATCGG
CCAGACGATGCAGCAGACCATGGGCCAGCTCATGAACTCGCTGCTCACCATCATCGGCGTGCTGGCGATGATGTTCTGGA
TCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTACCGCTGTCGGTGCTGGTGGCCACGCGCGTCGGCAAGCGGTCC
CAGCCGCAGTTCGTACAGCAGTGGAAGGTCACCGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACGCCCT
GGTCAAGATCTTCGGGCGGCAGGCGGAGTCGGCCGAGGCCTTCCGCGAGCAGAACGACGCGCTGTACGAGGCGGGGTTCA
AGGCCCAGTTCAACAGCGGCATCATGCAGCCGCTGATGATGTTCGTCTCCAACATCAACTACGTGCTGGTGGCGGTCATC
GGCGGGCTGCGGGTCGCTTCCGGTTCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGCA
GCCGCTGACCCAGGTCGCATCGATGGCGAACCTGGTGCAGTCGGGTGTGGCGTCCGCCGAGCGGATCTTCGAACTGCTCG
ACGCGGAGGAGCAGGCGCCCGACGCCGACTCCTCCGGTACGAAATCCGACGCGGTGTCCGACGCGGTGCCCGGTGCCCGT
GTCGCCGACCGTCCGGTGGCCGTGCGCGGCAGCATCTCGCTGGAGAAGGTCGCCTTCCGGTACGAGGCCGACAAGCCGCT
CATCGACGATCTGTCGCTCTCGGTCGAACCGGGGCACACGGTCGCGATCGTCGGACCGACCGGCGCGGGCAAGACGACAC
TCGTCAACCTGCTCATGCGGTTCTACGAGGTGACCGGCGGGCGGATCACGCTCGACGGGACCGACATCGCCAGCATGACG
CGGGAGGAACTGCGCTCCGGGATAGGCATGGTGCTCCAGGACACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGC
GTACGGCTCGTCGCGTGCCGTCACCCGCGAGGAGGTCGAGGAAGCCGCCCGGGCGGCCCACGCCGACCGGTTCATCCGCA
CCCTCCCCGAGGGGTACGAAACGGTCATCGACGACGAGGGTACGGGGGTGAGCGCGGGCGAGAAGCAGCTGATCACGATC
GCGCGGGCCTTCCTCTCCGACCCGGTGATCCTGGTGCTCGACGAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCT
GATCCAGCAGGCGATGGCCCGGCTGGCGCACGGCCGCACCAGCTTCGTCATCGCGCACCGGCTCTCCACGATCCGGGACG
CGGATGTGATTCTGGTGATGGAGAACGGGGCGATCGTGGAGCAGGGGTCGCACGAGGAGCTGCTGGCCGCGGACGGGGCG
TATGCGCGGCTCTACGCGGCGCAGTTCGCGCAGGCCGTGGTGGAGGTGGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(429-578)

ABC transporter transmembrane region (ABC_membrane)

(40-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.219

97.26

0.391