Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L2629_RS09455 Genome accession   NZ_CP091198
Coordinates   1774713..1775186 (+) Length   157 a.a.
NCBI ID   WP_010717253.1    Uniprot ID   -
Organism   Enterococcus faecalis strain UK045     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1769713..1780186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2629_RS09435 (L2629_09385) - 1773107..1773385 (+) 279 WP_216788134.1 hypothetical protein -
  L2629_RS09440 (L2629_09390) - 1773387..1773776 (+) 390 WP_002358476.1 hypothetical protein -
  L2629_RS09445 (L2629_09395) - 1773794..1774129 (+) 336 WP_002358250.1 thioredoxin fold domain-containing protein -
  L2629_RS09450 (L2629_09400) - 1774133..1774546 (+) 414 WP_002358251.1 hypothetical protein -
  L2629_RS09455 (L2629_09405) ssb 1774713..1775186 (+) 474 WP_010717253.1 single-stranded DNA-binding protein Machinery gene
  L2629_RS09460 (L2629_09410) - 1775219..1775641 (+) 423 WP_010717254.1 hypothetical protein -
  L2629_RS09465 (L2629_09415) - 1775634..1776023 (+) 390 WP_010717255.1 hypothetical protein -
  L2629_RS09470 (L2629_09420) - 1776129..1777465 (+) 1337 Protein_1746 hypothetical protein -
  L2629_RS09475 (L2629_09425) cylR2 1777911..1778110 (-) 200 Protein_1747 cytolysin regulator CylR2 -
  L2629_RS09480 (L2629_09430) cylL-L 1778514..1778720 (+) 207 WP_002358485.1 lanthipeptide cytolysin subunit CylL-L -
  L2629_RS09485 (L2629_09435) cylL-S 1778754..1778945 (+) 192 WP_002358181.1 lanthipeptide cytolysin subunit CylL-S -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17525.38 Da        Isoelectric Point: 4.9225

>NTDB_id=648285 L2629_RS09455 WP_010717253.1 1774713..1775186(+) (ssb) [Enterococcus faecalis strain UK045]
MINNVTLVGRLANDVDLRYTSSGIAVGQFRLAVNRNFTNQSGEREADFISCAIWRKAAESLANYARKGSLLGITGRIQTR
NYDNQQGQRVYVTEVIVENFQLLESKEISEQRRANASTPVTNGQQANNQQQTPLPDPFDPFSKESSPVNISDDDLPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=648285 L2629_RS09455 WP_010717253.1 1774713..1775186(+) (ssb) [Enterococcus faecalis strain UK045]
ATGATTAATAATGTTACGTTAGTTGGGCGTTTAGCTAATGATGTGGATTTAAGGTATACATCAAGTGGTATTGCAGTTGG
ACAATTTCGTTTAGCAGTCAATCGGAATTTTACCAATCAATCTGGGGAGCGAGAAGCGGATTTTATTAGTTGTGCGATAT
GGCGTAAAGCGGCAGAATCGCTTGCCAATTACGCACGTAAAGGTAGCTTACTTGGAATTACTGGTCGTATTCAGACGCGA
AACTATGATAACCAGCAAGGACAACGTGTTTATGTGACAGAAGTGATTGTAGAAAATTTTCAATTGTTAGAATCCAAAGA
AATAAGCGAACAACGTCGGGCGAATGCTTCTACGCCTGTAACCAATGGGCAGCAGGCCAATAACCAACAGCAGACACCAC
TTCCTGATCCGTTTGATCCTTTCTCAAAGGAGTCTAGCCCAGTAAATATTTCGGATGATGATTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.059

100

0.618
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.163

100

0.561
  ssbB Bacillus subtilis subsp. subtilis str. 168

56.604

67.516

0.382