Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   L2Y01_RS24465 Genome accession   NZ_CP091147
Coordinates   5382771..5384111 (+) Length   446 a.a.
NCBI ID   WP_005614620.1    Uniprot ID   A0A3M5TMA0
Organism   Pseudomonas avellanae strain NCPPB 4222     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5377771..5389111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y01_RS24440 (L2Y01_24440) pgeF 5377955..5378683 (-) 729 WP_024420884.1 peptidoglycan editing factor PgeF -
  L2Y01_RS24445 (L2Y01_24445) rluD 5378680..5379642 (-) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L2Y01_RS24450 (L2Y01_24450) - 5379792..5380814 (+) 1023 WP_024420883.1 outer membrane protein assembly factor BamD -
  L2Y01_RS24455 (L2Y01_24455) - 5380944..5381183 (+) 240 WP_057403016.1 PP0621 family protein -
  L2Y01_RS24460 (L2Y01_24460) pilS 5381173..5382768 (+) 1596 WP_005614622.1 ATP-binding protein Regulator
  L2Y01_RS24465 (L2Y01_24465) pilR 5382771..5384111 (+) 1341 WP_005614620.1 sigma-54 dependent transcriptional regulator Regulator
  L2Y01_RS24470 (L2Y01_24470) - 5384693..5385310 (+) 618 WP_005614619.1 TetR/AcrR family transcriptional regulator -
  L2Y01_RS24475 (L2Y01_24475) - 5385392..5386508 (+) 1117 Protein_4839 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49981.10 Da        Isoelectric Point: 6.8233

>NTDB_id=648049 L2Y01_RS24465 WP_005614620.1 5382771..5384111(+) (pilR) [Pseudomonas avellanae strain NCPPB 4222]
MSPRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHDWLAREPFDMCLTDMRLPDGNGLELVQHIQHGYPHVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPCATQPVRSIDSRLLGDSPPMRTLRNQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRINKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQIAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESASPQTQQGANLADIDNLE
DYLESIERKLILQALEETRWNRTAAAERLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=648049 L2Y01_RS24465 WP_005614620.1 5382771..5384111(+) (pilR) [Pseudomonas avellanae strain NCPPB 4222]
ATGAGCCCACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGATATTCGCGAACTTCTGGAGATCACCCTCGGGCGCAT
GAAGCTCGACACCCGCAGCGCTCGCAACGTCGCCGAGGCCCATGACTGGCTGGCCCGCGAGCCGTTCGATATGTGCCTGA
CCGACATGCGCCTGCCCGATGGCAACGGCCTGGAACTGGTGCAGCACATCCAGCACGGCTACCCCCATGTGCCGGTGGCG
ATGATCACCGCCCACGGTAACCTGGACACGGCGATTCATGCGTTGAAAGCCGGAGCCTTCGATTTTGTGACCAAACCGGT
GGACCTCAACCGGCTCCGCGAACTGGTCAATAGTGCGCTGAGCCTGCCCTGCGCCACTCAACCGGTGCGCAGCATCGACA
GCCGTCTGCTGGGTGATTCGCCACCGATGCGCACCCTGCGTAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCCATT
TACATCAGCGGCGAGTCGGGCAGCGGCAAGGAGCTGGTGGCCAGGCTGATCCACGAGCAAGGGCCGCGCATCAACAAACC
CTTCGTGCCGGTCAACTGCGGGGCGATCCCCTCCGAATTGATGGAGAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTCA
GCGGTGCCCACGAAGACAAGCCGGGCCTATTCCAAGCGGCGCACAACGGGACGCTGTTCCTTGATGAGGTCGCCGATCTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGCGCGATCCAGGAAAAGTCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGACGTGCGTATTCTGTGCGCCACCCACAAGGACCTGAATGTCGAAGTCGCTGCGGGCCGTTTCCGTCAAGACCTGT
ATTACCGACTTAACGTGATCGAACTGCGCGTGCCTTCATTGCGCGAGCGGCGTGAAGACATCGATCAGATTGCAGCCAGC
GTTTTGCGACGGCTTGCCGGCAACGGCGCTCAGCCCGTCGCGCGCTTGCATGCGCAGGCTCTGGAAACACTGAAAAGTTA
TCGATTCCCTGGGAACGTGCGCGAACTGGAAAACATGCTGGAGCGCGCTTACACCCTCTGTGAAAACGATGAAATCCACG
CCAGCGACCTGCGCCTCGCCGAGTCCGCCAGCCCCCAGACACAACAGGGTGCGAACCTGGCTGATATCGATAACCTGGAA
GACTACCTGGAAAGCATCGAACGCAAACTCATCCTCCAGGCCCTGGAAGAAACCCGCTGGAACCGCACCGCCGCGGCCGA
GCGGCTCAGTTTGTCATTCAGATCGTTGCGCTACCGGTTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-116)

Sigma-54 interaction domain (Sigma54_activat)

(137-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M5TMA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

99.327

0.776
  pilR Acinetobacter baumannii strain A118

48.802

100

0.502