Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   L2Y01_RS24460 Genome accession   NZ_CP091147
Coordinates   5381173..5382768 (+) Length   531 a.a.
NCBI ID   WP_005614622.1    Uniprot ID   A0A3M5TMV8
Organism   Pseudomonas avellanae strain NCPPB 4222     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5376173..5387768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y01_RS24440 (L2Y01_24440) pgeF 5377955..5378683 (-) 729 WP_024420884.1 peptidoglycan editing factor PgeF -
  L2Y01_RS24445 (L2Y01_24445) rluD 5378680..5379642 (-) 963 WP_003381266.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  L2Y01_RS24450 (L2Y01_24450) - 5379792..5380814 (+) 1023 WP_024420883.1 outer membrane protein assembly factor BamD -
  L2Y01_RS24455 (L2Y01_24455) - 5380944..5381183 (+) 240 WP_057403016.1 PP0621 family protein -
  L2Y01_RS24460 (L2Y01_24460) pilS 5381173..5382768 (+) 1596 WP_005614622.1 ATP-binding protein Regulator
  L2Y01_RS24465 (L2Y01_24465) pilR 5382771..5384111 (+) 1341 WP_005614620.1 sigma-54 dependent transcriptional regulator Regulator
  L2Y01_RS24470 (L2Y01_24470) - 5384693..5385310 (+) 618 WP_005614619.1 TetR/AcrR family transcriptional regulator -
  L2Y01_RS24475 (L2Y01_24475) - 5385392..5386508 (+) 1117 Protein_4839 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 531 a.a.        Molecular weight: 58287.19 Da        Isoelectric Point: 6.7758

>NTDB_id=648048 L2Y01_RS24460 WP_005614622.1 5381173..5382768(+) (pilS) [Pseudomonas avellanae strain NCPPB 4222]
MTADTPSLTSPQAQRILRLYHLYRLTIGVVLVLLISSSLETELLQLANPNLFRSGCWLYLVFNILVVVLLERPSRQAQLF
GLAMTDAIMLSALFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAVSAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARLQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVERLRQWLINPIMVPRSITTSSIGPVLQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEDLSAPDRRLGQIIHDQSQRIDRVIENVLQLSRRREAQPELLDLKVWLENFVSDFRSSAATD
QSIHVQISPGMLTTRMDAGQLTQIITNLVQNGLRYSSRSHPSAQVWLKLQPDRESDLPILEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNQAHLEYIPRPHDGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1596 bp        

>NTDB_id=648048 L2Y01_RS24460 WP_005614622.1 5381173..5382768(+) (pilS) [Pseudomonas avellanae strain NCPPB 4222]
GTGACCGCTGATACGCCTTCGCTTACCAGCCCGCAGGCACAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
TGGCGTCGTGCTGGTTCTGTTGATCTCCAGCAGTCTGGAAACCGAGTTGCTGCAACTGGCCAATCCGAATCTGTTCCGTT
CGGGTTGCTGGCTGTACCTGGTGTTCAACATTCTGGTGGTGGTGCTGCTGGAACGCCCCAGCCGCCAGGCGCAGCTGTTT
GGCTTGGCGATGACTGACGCAATCATGCTTTCCGCGCTGTTTTATGCGGCCGGCGGGCCGTCGAGCGGCATCGGCAACCT
GTTGATCGCGTCCGTGGCGATCAGCAACGTGCTGCTGCGAGGCCGTATCGGCCTGTTGATCGCCGCCGTTTCTGCCATTG
GCATCATCTACCTGACGTTCTATATCAGCTTCGGCACACCTTCGGTGTCCAACGACTACGTGCAGGCCGGCTCTCTGGGT
GCGCTGTGCTTCGCCGCCGCGCTGCTGGTGCAGGCACTGACTGCGCGCCTGCAAGTCAGCGAGGGGCTGGCCGAGCAACG
GGCAGCGGATGTCGACAGCCTTGAAGAGCTCAACGCTCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGATG
CGCGCCGTCAGGTGTTGCTGGCCAATCAGGGGGCCTTGACCCTGCTGGGCCACGAACGGCTGGTCGGCCAGGTCATCGAC
GCTTACTCGCCACAGTTGGTCGAACGCCTGCGCCAGTGGCTGATCAACCCGATCATGGTGCCGCGCAGCATCACCACTTC
ATCGATCGGGCCTGTGCTGCAACCCAGCTTTGCCGCGCTCAATCGGGGCGACCAGCGCCAGACGCTGATCTTCCTTGAAG
ACCTGTCGCAGATTGCCCATCAGGCGCAGCAGCTCAAGCTTGCCGCGCTGGGCCGCCTGACCGCAGGCATCGCCCACGAA
ATACGTAATCCGCTGGGCGCGGTCAGCCACGCTGCGCAGTTACTCAACGAGTCGGAAGACCTCAGCGCGCCGGACCGCCG
TCTGGGGCAGATTATTCATGATCAGTCGCAGCGCATTGATCGGGTGATTGAAAACGTCCTGCAACTGTCTCGCCGACGCG
AAGCACAGCCGGAACTGCTCGACCTGAAAGTCTGGCTGGAAAATTTTGTCAGCGACTTTCGCAGCTCGGCGGCTACGGAT
CAGTCGATTCATGTGCAAATCAGCCCCGGCATGCTGACCACTCGCATGGACGCCGGTCAACTGACCCAGATCATCACCAA
CCTGGTGCAGAACGGCTTACGTTACAGCAGCCGCAGTCACCCGTCGGCGCAAGTCTGGCTGAAGCTGCAGCCAGACCGGG
AAAGCGATTTACCGATTCTGGAAGTCCTGGACGACGGGCCGGGTGTCAGCGAACAACACCTGAGCAAGATTTTCGAACCG
TTTTTCACCACGGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGTGAATTGTGCGAAAGCAATCAGGCGCATCT
GGAATACATTCCCCGACCACACGACGGTGGCAGCTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M5TMV8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.842

100

0.62