Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L2Y00_RS11255 Genome accession   NZ_CP091143
Coordinates   2546442..2548658 (-) Length   738 a.a.
NCBI ID   WP_005619737.1    Uniprot ID   A0A3M5ST57
Organism   Pseudomonas avellanae strain NCPPB 3491     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2541442..2553658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y00_RS11225 (L2Y00_11225) murB 2542241..2543260 (-) 1020 WP_005619732.1 UDP-N-acetylmuramate dehydrogenase -
  L2Y00_RS11230 (L2Y00_11230) kdsB 2543295..2544059 (-) 765 WP_005619733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Y00_RS11235 (L2Y00_11235) - 2544056..2544241 (-) 186 WP_003381112.1 Trm112 family protein -
  L2Y00_RS11240 (L2Y00_11240) lpxK 2544259..2545254 (-) 996 WP_005619735.1 tetraacyldisaccharide 4'-kinase -
  L2Y00_RS11245 (L2Y00_11245) - 2545254..2545685 (-) 432 WP_024420323.1 biopolymer transporter ExbD -
  L2Y00_RS11250 (L2Y00_11250) exbB 2545682..2546398 (-) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Y00_RS11255 (L2Y00_11255) comA 2546442..2548658 (-) 2217 WP_005619737.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L2Y00_RS11260 (L2Y00_11260) - 2548796..2549584 (-) 789 WP_005619739.1 ABC transporter permease -
  L2Y00_RS11265 (L2Y00_11265) - 2549581..2550513 (-) 933 WP_005619741.1 ABC transporter ATP-binding protein -
  L2Y00_RS11270 (L2Y00_11270) - 2550681..2551304 (-) 624 WP_005619742.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80682.93 Da        Isoelectric Point: 10.3658

>NTDB_id=647999 L2Y00_RS11255 WP_005619737.1 2546442..2548658(-) (comA) [Pseudomonas avellanae strain NCPPB 3491]
MRTGMIALALGLVVLRFLPALPPTWLVLLMPILALMLLPFRTYPLALFLLGFTWACVSAQWALNDRLQQRLDGQTLWLQG
KVVGLPSVAEGVVRFELEHATSRRAKLPALIRVAWYGGPEVRSGERWRLAVKLKRPGGLVNPDAFDYQAWLLAQRIGATG
TVVDGRRLAPAHAAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSSGDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPSACALAFIAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPFLISFNAVLIVEPL
VTLQPGFWLSFAAVGILVLIFSGRLGSWSWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPPAL
IGTLLLPFPVVGEGLLWLAGGALEWLFVFLGWVAEALPAWLPSAVPGWAWLLSLLGAFVLLLPKGVPLRLLGWPLLLLCV
FPPLKSVPMGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKSGVRHLDLMLISHADADHAGGA
AAVHRAFPVNRVLGGELARLAPQLDARLCENNERWEWDGVVFSTWRWEQAPDGNAGSCMLSVDAGGERLLLTGDIDVHAE
RAAMDSGFDLRAHWLQAPHHGSRSSSSKVFLQTVAPVGVLISRGQNNAFGHPHPLVMSRYRWLGITHHDSAELGAISLQL
GAFGQPRAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=647999 L2Y00_RS11255 WP_005619737.1 2546442..2548658(-) (comA) [Pseudomonas avellanae strain NCPPB 3491]
ATGCGCACAGGGATGATCGCGCTCGCGTTGGGGCTTGTGGTCCTACGCTTTCTGCCCGCTTTGCCGCCGACGTGGCTCGT
GTTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGCACTTATCCATTGGCGCTGTTTCTGCTCGGCTTCACCT
GGGCGTGTGTTTCGGCGCAGTGGGCGTTGAATGACCGTTTGCAGCAACGGCTGGACGGCCAGACGCTGTGGCTGCAAGGC
AAAGTGGTCGGTTTGCCGAGCGTTGCCGAGGGCGTGGTTCGTTTCGAGCTGGAGCACGCCACGTCGCGGCGGGCGAAGCT
GCCTGCGCTGATTCGTGTGGCGTGGTACGGCGGCCCTGAGGTGCGCAGCGGCGAGCGCTGGCGTCTGGCGGTCAAGCTCA
AGCGCCCCGGTGGGCTGGTCAACCCTGATGCTTTCGATTATCAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCGACCGGT
ACGGTGGTGGACGGTCGAAGGCTGGCGCCCGCGCATGCGGCCTGGCGCGACGGTATTCGTCAGCGTTTGCTGGCGGTCGA
TGCACAGGGCAGGGAAGGCGGGCTGGCCGCGCTGGTGCTGGGCGATGGCTCGGGGTTGTCGAGTGGCGACTGGCAGGTGC
TGCAAGACACCGGCACCGTGCACCTGCTGGTGATTTCCGGTCAGCACATCGGCTTGCTTGCTGGCGTGATTTACGCGCTG
GTCGCAGGTCTCGCCCGCTGGGGACTGTGGCCACGCGCTTTGCCCTGGCTGCCCTCGGCCTGTGCGCTGGCATTCATCGC
TGCGCTGGGCTACGGATTGCTGGCCGGTTTCGAGGTGCCGGTGCGGCGCGCCTGTGTGATGGTCGGCATGGTCTTGCTGT
GGCGTTTGCGCTTTCGGCATCTGGGCGTGGTCTGGCCGTTTTTGATTTCCTTCAACGCGGTGCTGATCGTTGAGCCGTTG
GTGACGTTGCAGCCGGGTTTCTGGCTGTCTTTTGCAGCGGTCGGCATTCTGGTACTGATTTTCAGTGGCCGTCTGGGTAG
CTGGAGCTGGTGGCAGAGCTGGACGCGCGCGCAGTGGCTGATCGCAATCGGCTTGTTGCCGATTTTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGCCCGTTCGCCAACCTGCTTGCGGTGCCTTGGGTCAGTGTGATCGTCCTGCCGCCAGCGTTG
ATCGGGACGTTATTGCTGCCGTTTCCTGTTGTCGGTGAAGGCCTGCTCTGGCTTGCGGGGGGCGCGCTGGAGTGGCTGTT
CGTGTTTCTCGGTTGGGTGGCCGAGGCCTTGCCCGCCTGGCTGCCCAGTGCGGTGCCTGGCTGGGCGTGGCTGTTGAGCC
TGCTCGGGGCCTTTGTTTTATTGCTGCCCAAAGGTGTGCCGCTGCGCCTGTTGGGTTGGCCATTATTGTTGCTGTGCGTG
TTTCCGCCGCTCAAGTCCGTGCCGATGGGGCAGGTCGAGGTGTTGCAACTGGACGTGGGGCAGGGGCTGGCGATTCTGCT
GCGCACCCGCAATCACACGCTGCTCTACGACGCAGGGCCGCGTTTCGGTGAGTTCGATATAGGCCAAAGGGTGGTCGTGC
CCGCGATGCGCAAGTCCGGTGTTCGCCATCTGGACTTGATGCTGATCAGCCATGCCGATGCGGATCATGCTGGCGGGGCG
GCAGCGGTTCATCGGGCATTTCCGGTGAACCGAGTGCTGGGCGGGGAGCTGGCCCGGCTCGCCCCGCAACTCGATGCCCG
GCTGTGTGAGAACAACGAGCGCTGGGAATGGGATGGCGTGGTGTTTTCCACCTGGCGCTGGGAGCAGGCGCCCGACGGCA
ATGCCGGGTCCTGCATGCTGAGCGTCGACGCCGGTGGTGAGCGTCTGCTGCTGACGGGCGACATTGATGTGCACGCCGAG
CGTGCGGCAATGGACAGCGGTTTTGACCTTCGTGCCCACTGGTTGCAGGCTCCGCATCACGGCAGCCGCAGTTCATCCTC
CAAAGTGTTTCTGCAGACGGTTGCGCCGGTGGGCGTGCTGATTTCCCGTGGGCAGAACAATGCTTTCGGTCATCCGCATC
CATTGGTCATGTCGCGGTACCGATGGTTGGGAATTACCCACCATGACAGCGCCGAACTAGGTGCCATCAGTCTGCAACTG
GGGGCGTTCGGCCAGCCTCGGGCGGAACGGGCGCAGCGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(21-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3M5ST57

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.408

97.019

0.615
  comA Ralstonia pseudosolanacearum GMI1000

32.381

100

0.369