Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L2Y00_RS11250 Genome accession   NZ_CP091143
Coordinates   2545682..2546398 (-) Length   238 a.a.
NCBI ID   WP_007245835.1    Uniprot ID   A0A2G7MEY6
Organism   Pseudomonas avellanae strain NCPPB 3491     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2540682..2551398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Y00_RS11225 (L2Y00_11225) murB 2542241..2543260 (-) 1020 WP_005619732.1 UDP-N-acetylmuramate dehydrogenase -
  L2Y00_RS11230 (L2Y00_11230) kdsB 2543295..2544059 (-) 765 WP_005619733.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L2Y00_RS11235 (L2Y00_11235) - 2544056..2544241 (-) 186 WP_003381112.1 Trm112 family protein -
  L2Y00_RS11240 (L2Y00_11240) lpxK 2544259..2545254 (-) 996 WP_005619735.1 tetraacyldisaccharide 4'-kinase -
  L2Y00_RS11245 (L2Y00_11245) - 2545254..2545685 (-) 432 WP_024420323.1 biopolymer transporter ExbD -
  L2Y00_RS11250 (L2Y00_11250) exbB 2545682..2546398 (-) 717 WP_007245835.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L2Y00_RS11255 (L2Y00_11255) comA 2546442..2548658 (-) 2217 WP_005619737.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L2Y00_RS11260 (L2Y00_11260) - 2548796..2549584 (-) 789 WP_005619739.1 ABC transporter permease -
  L2Y00_RS11265 (L2Y00_11265) - 2549581..2550513 (-) 933 WP_005619741.1 ABC transporter ATP-binding protein -
  L2Y00_RS11270 (L2Y00_11270) - 2550681..2551304 (-) 624 WP_005619742.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25863.42 Da        Isoelectric Point: 7.9105

>NTDB_id=647998 L2Y00_RS11250 WP_007245835.1 2545682..2546398(-) (exbB) [Pseudomonas avellanae strain NCPPB 3491]
MIEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLANSKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIEIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=647998 L2Y00_RS11250 WP_007245835.1 2545682..2546398(-) (exbB) [Pseudomonas avellanae strain NCPPB 3491]
ATGATAGAGTGGCGCCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGTGGCTGGATGATGCTGCC
GATCATTTTGAGCTCCATCGCCGCTGCCGGCATTATCATCGAACGCCTGTGGACCCTGCGCGCCAGCCGCATCGCGCCGC
CGCATCTGCTGGGTCAGGCGTGGCAGTGGATTCAGGAAAAGAAACTCGATAACGAAAAACTCAAGCAACTGCGCGCCGAC
TCGCCGCTGGGCGAAATCCTTGCCGCTGGCCTGGCCAATTCCAAGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGA
GGCCGCAGCTCGTGTCATCCATGACCTGGAGCGCTACCTGAGCGCGCTGGGCTCTATCGCAGCGATGGCCCCGTTGCTCG
GTTTGCTCGGTACGGTGCTGGGCATGATCGAGATCTTCGGTTCGTTCAACAGCACCGGTGCAACGGCCAATGCCGGTGTG
CTGGCGAGCGGTATCTCCAAGGCATTGATCTGTACCGCATCGGGCCTTATCGTGGCAATCCCGGCGATCTTCTTTCACCG
CTTTCTGCAAAGTCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCGATTCGTCTGGTTGAAGTGGTGCAGGGTG
ACCGTGATGTCGATCTGATCGACGCCAAGATCGACCTCAAATCGCTGGCCAGGGCAGGCGGGAGCAAGAAAAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2G7MEY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

78.571

88.235

0.693