Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   SCAZ3_RS07420 Genome accession   NZ_AIDX01000001
Coordinates   1539861..1540868 (+) Length   335 a.a.
NCBI ID   WP_003047152.1    Uniprot ID   A0AAV3FQM1
Organism   Streptococcus canis FSL Z3-227     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 1534861..1545868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS07390 (SCAZ3_02870) smpB 1535088..1535555 (+) 468 WP_003047135.1 SsrA-binding protein SmpB -
  SCAZ3_RS07395 (SCAZ3_02875) - 1535715..1536155 (+) 441 WP_003047139.1 hypothetical protein -
  SCAZ3_RS07400 (SCAZ3_02880) - 1536287..1537213 (-) 927 WP_003047141.1 glycosyltransferase family 2 protein -
  SCAZ3_RS07405 (SCAZ3_02885) - 1537501..1537878 (-) 378 WP_003047144.1 lactoylglutathione lyase -
  SCAZ3_RS07410 (SCAZ3_02890) - 1537888..1538553 (-) 666 WP_003047146.1 NAD(P)H-dependent oxidoreductase -
  SCAZ3_RS07415 (SCAZ3_02895) - 1538602..1539687 (-) 1086 WP_003047149.1 M24 family metallopeptidase -
  SCAZ3_RS07420 (SCAZ3_02900) ccpA 1539861..1540868 (+) 1008 WP_003047152.1 catabolite control protein A Regulator
  SCAZ3_RS07425 (SCAZ3_02905) - 1541022..1542485 (+) 1464 WP_003047154.1 alpha-amylase -
  SCAZ3_RS07430 (SCAZ3_02910) - 1542563..1543561 (+) 999 WP_003047156.1 glycosyltransferase family 4 protein -
  SCAZ3_RS07435 (SCAZ3_02915) - 1543563..1544897 (+) 1335 WP_003047159.1 glycosyltransferase family 4 protein -

Sequence


Protein


Download         Length: 335 a.a.        Molecular weight: 36890.99 Da        Isoelectric Point: 5.4980

>NTDB_id=64795 SCAZ3_RS07420 WP_003047152.1 1539861..1540868(+) (ccpA) [Streptococcus canis FSL Z3-227]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILAKGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLDHQLPS
VNIDYKAAVSNVVDILAENHMSIAFVSGPLIDDINGKVRLAGYKEGLKQNKLDFKEGLVFEANYSYKEGFELAQRVINSG
ATAAYVAEDELAAGLLNGLFEAGKRVPEDFEIITSNDSPVVQYTRPNLSSISQPVYDLGAVSMRMLTKIMNKEELEEKEI
LLNHGIKKRGTTRQG

Nucleotide


Download         Length: 1008 bp        

>NTDB_id=64795 SCAZ3_RS07420 WP_003047152.1 1539861..1540868(+) (ccpA) [Streptococcus canis FSL Z3-227]
ATGAATACAGATGATACCATCACGATTTACGATGTTGCCCGTGAAGCTGGTGTTTCAATGGCAACCGTTAGTCGTGTTGT
TAATGGCAACAAAAACGTTAAGGAAAACACACGTAAGAAAGTTTTAGAAGTCATTGACCGCTTAGATTATCGTCCAAATG
CTGTCGCGCGTGGACTTGCCAGCAAAAAAACAACAACAGTTGGTGTTGTGATTCCTAATATTGCAAACAGTTACTTTTCT
ATCTTAGCCAAAGGTATTGATGATATTGCCGCTATGTATAAATATAATATTGTGCTTGCCTCCAGTGATGAGGATGATGA
CAAGGAGGTTAACGTTGTTAACACTCTCTTTGCTAAGCAGGTGGACGGTATTATTTTTATGGGGCATCACTTGACTGAAA
AGATTCGTGCGGAATTCTCACGTTCACGGACACCGATTGTTTTGGCAGGAACCGTAGACCTCGATCATCAACTACCAAGT
GTTAATATTGACTATAAAGCAGCTGTCTCAAATGTGGTTGATATTTTAGCGGAAAACCATATGAGCATTGCTTTTGTATC
TGGTCCTCTCATTGATGACATCAATGGCAAGGTACGCTTAGCGGGCTACAAAGAAGGTTTGAAGCAAAACAAACTAGATT
TCAAAGAAGGGCTTGTTTTTGAAGCAAATTACTCTTATAAGGAAGGCTTTGAACTAGCACAACGCGTGATTAATTCAGGG
GCAACAGCAGCTTATGTTGCTGAGGATGAATTGGCAGCAGGCCTTTTAAATGGCTTATTTGAAGCAGGTAAACGTGTGCC
AGAAGACTTTGAAATCATCACAAGCAACGATTCGCCAGTGGTTCAATACACTCGTCCAAACTTGAGTTCTATCAGTCAAC
CCGTTTACGATTTGGGAGCTGTCAGCATGCGCATGTTGACTAAAATCATGAACAAAGAAGAATTGGAAGAAAAAGAAATT
CTCTTGAACCACGGCATCAAAAAACGTGGTACAACCAGACAAGGTTAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

77.844

99.701

0.776

  ccpA Streptococcus pneumoniae D39

76.048

99.701

0.758

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

55.287

98.806

0.546


Multiple sequence alignment