Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L1999_RS29435 Genome accession   NZ_CP091110
Coordinates   6238531..6239052 (-) Length   173 a.a.
NCBI ID   WP_144566168.1    Uniprot ID   A0A561D8G4
Organism   Neobacillus drentensis strain JC05     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6233531..6244052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1999_RS29415 (L1999_29415) rplI 6234732..6235181 (-) 450 WP_235741740.1 50S ribosomal protein L9 -
  L1999_RS29420 (L1999_29420) - 6235178..6237151 (-) 1974 WP_235741741.1 DHH family phosphoesterase -
  L1999_RS29425 (L1999_29425) - 6237174..6238118 (-) 945 WP_235741742.1 YybS family protein -
  L1999_RS29430 (L1999_29430) rpsR 6238241..6238480 (-) 240 WP_007088219.1 30S ribosomal protein S18 -
  L1999_RS29435 (L1999_29435) ssbA 6238531..6239052 (-) 522 WP_144566168.1 single-stranded DNA-binding protein Machinery gene
  L1999_RS29440 (L1999_29440) rpsF 6239124..6239411 (-) 288 WP_098530221.1 30S ribosomal protein S6 -
  L1999_RS29445 (L1999_29445) ychF 6239600..6240700 (-) 1101 WP_215047307.1 redox-regulated ATPase YchF -
  L1999_RS29450 (L1999_29450) - 6240821..6242833 (-) 2013 WP_235744504.1 molybdopterin-dependent oxidoreductase -
  L1999_RS29455 (L1999_29455) - 6242910..6243107 (-) 198 WP_098530218.1 DUF951 domain-containing protein -
  L1999_RS29460 (L1999_29460) - 6243136..6244005 (-) 870 WP_235741743.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19040.95 Da        Isoelectric Point: 4.9815

>NTDB_id=647817 L1999_RS29435 WP_144566168.1 6238531..6239052(-) (ssbA) [Neobacillus drentensis strain JC05]
MMNRVVLVGRLTKDPDLRYTPNGVPVATFTLAVNRPFSSQSGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQTR
NYEGQDGKRVYVTEVQAESVQFLEPKSSSGGGGRSNNDYYGAPPMEPQQGNSYGSGNQNQRPNQNQNKGFTRMDEDPFAG
TGQIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=647817 L1999_RS29435 WP_144566168.1 6238531..6239052(-) (ssbA) [Neobacillus drentensis strain JC05]
ATGATGAATCGTGTCGTGCTTGTAGGTCGTTTAACAAAAGATCCAGATTTGCGTTATACACCAAATGGGGTTCCTGTTGC
TACTTTTACTTTAGCAGTTAACCGTCCATTTTCTAGTCAATCAGGTGAGCGGGAAGCAGACTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCTGAAAATGTGGCGAACTTCTTAAAAAAAGGCAGCCTTGCAGGTGTTGATGGCCGTATTCAAACGCGC
AACTATGAGGGACAAGATGGTAAACGTGTTTACGTTACAGAGGTTCAAGCGGAAAGTGTTCAATTTCTAGAGCCTAAGTC
CTCTTCTGGTGGTGGCGGAAGAAGCAATAACGATTATTATGGTGCTCCTCCTATGGAACCACAACAAGGTAATTCCTATG
GCAGCGGCAATCAGAATCAACGTCCAAACCAAAATCAAAACAAAGGGTTTACTCGTATGGATGAAGATCCATTTGCAGGA
ACTGGCCAGATTGACATCTCTGATGACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A561D8G4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.667

100

0.682
  ssb Latilactobacillus sakei subsp. sakei 23K

51.613

100

0.555
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.272

0.393