Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | L1881_RS12320 | Genome accession | NZ_CP091100 |
| Coordinates | 2547028..2547513 (+) | Length | 161 a.a. |
| NCBI ID | WP_235692284.1 | Uniprot ID | - |
| Organism | Enterococcus faecium strain P47 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2537470..2560408 | 2547028..2547513 | within | 0 |
Gene organization within MGE regions
Location: 2537470..2560408
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1881_RS12235 (L1881_12235) | - | 2537470..2538618 (-) | 1149 | WP_104890448.1 | site-specific integrase | - |
| L1881_RS12240 (L1881_12240) | - | 2538630..2538941 (-) | 312 | WP_002372718.1 | hypothetical protein | - |
| L1881_RS12245 (L1881_12245) | - | 2538995..2539390 (-) | 396 | WP_002321996.1 | ImmA/IrrE family metallo-endopeptidase | - |
| L1881_RS12250 (L1881_12250) | - | 2539426..2539770 (-) | 345 | WP_002305405.1 | helix-turn-helix domain-containing protein | - |
| L1881_RS12255 (L1881_12255) | - | 2540071..2540292 (+) | 222 | WP_235692282.1 | hypothetical protein | - |
| L1881_RS12260 (L1881_12260) | - | 2540553..2540978 (-) | 426 | WP_016628579.1 | hypothetical protein | - |
| L1881_RS12265 (L1881_12265) | - | 2541033..2541806 (+) | 774 | WP_192183979.1 | phage antirepressor KilAC domain-containing protein | - |
| L1881_RS12270 (L1881_12270) | - | 2541809..2542021 (+) | 213 | WP_002330306.1 | helix-turn-helix transcriptional regulator | - |
| L1881_RS12275 (L1881_12275) | - | 2541999..2542283 (+) | 285 | WP_010722867.1 | hypothetical protein | - |
| L1881_RS12280 (L1881_12280) | - | 2542304..2542492 (+) | 189 | WP_002301530.1 | hypothetical protein | - |
| L1881_RS13960 | - | 2542631..2542759 (+) | 129 | WP_010721846.1 | hypothetical protein | - |
| L1881_RS12285 (L1881_12285) | - | 2542819..2543160 (+) | 342 | WP_104885305.1 | hypothetical protein | - |
| L1881_RS12290 (L1881_12290) | - | 2543153..2543887 (+) | 735 | WP_048340703.1 | DUF1071 domain-containing protein | - |
| L1881_RS12295 (L1881_12295) | - | 2543893..2544579 (+) | 687 | WP_070544166.1 | putative HNHc nuclease | - |
| L1881_RS12300 (L1881_12300) | - | 2544583..2545278 (+) | 696 | WP_235692283.1 | helix-turn-helix domain-containing protein | - |
| L1881_RS12305 (L1881_12305) | - | 2545268..2546506 (+) | 1239 | WP_070703875.1 | DnaB-like helicase C-terminal domain-containing protein | - |
| L1881_RS12310 (L1881_12310) | - | 2546507..2546695 (+) | 189 | WP_002346393.1 | hypothetical protein | - |
| L1881_RS12315 (L1881_12315) | - | 2546692..2547027 (+) | 336 | WP_002346392.1 | VRR-NUC domain-containing protein | - |
| L1881_RS12320 (L1881_12320) | ssb | 2547028..2547513 (+) | 486 | WP_235692284.1 | single-stranded DNA-binding protein | Machinery gene |
| L1881_RS12325 (L1881_12325) | - | 2547530..2547691 (+) | 162 | WP_002301517.1 | hypothetical protein | - |
| L1881_RS12330 (L1881_12330) | - | 2547688..2547996 (+) | 309 | WP_235692285.1 | hypothetical protein | - |
| L1881_RS12335 (L1881_12335) | - | 2547993..2548268 (+) | 276 | WP_002333651.1 | hypothetical protein | - |
| L1881_RS14120 | - | 2548276..2548468 (+) | 193 | Protein_2387 | hypothetical protein | - |
| L1881_RS12340 (L1881_12340) | - | 2548468..2548782 (+) | 315 | WP_070544170.1 | DUF1140 family protein | - |
| L1881_RS12345 (L1881_12345) | - | 2548959..2549270 (+) | 312 | WP_235692286.1 | MazG-like family protein | - |
| L1881_RS12350 (L1881_12350) | - | 2549267..2549470 (+) | 204 | WP_235692287.1 | toxin PIN | - |
| L1881_RS12355 (L1881_12355) | - | 2549467..2549775 (+) | 309 | WP_235692288.1 | hypothetical protein | - |
| L1881_RS12360 (L1881_12360) | - | 2549796..2550140 (-) | 345 | WP_139969718.1 | hypothetical protein | - |
| L1881_RS12365 (L1881_12365) | - | 2550251..2550664 (+) | 414 | WP_002332450.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| L1881_RS12370 (L1881_12370) | - | 2550923..2551081 (+) | 159 | WP_192178448.1 | hypothetical protein | - |
| L1881_RS12375 (L1881_12375) | - | 2551419..2551583 (+) | 165 | WP_170082159.1 | hypothetical protein | - |
| L1881_RS12380 (L1881_12380) | - | 2551775..2551987 (+) | 213 | WP_002293005.1 | hypothetical protein | - |
| L1881_RS12385 (L1881_12385) | - | 2551994..2552218 (+) | 225 | WP_235692289.1 | hypothetical protein | - |
| L1881_RS12390 (L1881_12390) | - | 2552244..2552699 (+) | 456 | WP_002311445.1 | terminase small subunit | - |
| L1881_RS12395 (L1881_12395) | - | 2552692..2553990 (+) | 1299 | WP_033624375.1 | PBSX family phage terminase large subunit | - |
| L1881_RS12400 (L1881_12400) | - | 2554003..2555502 (+) | 1500 | WP_235692290.1 | phage portal protein | - |
| L1881_RS12405 (L1881_12405) | - | 2555507..2556001 (+) | 495 | Protein_2401 | phage head morphogenesis protein | - |
| L1881_RS12410 (L1881_12410) | - | 2556115..2557023 (+) | 909 | WP_010721433.1 | IS982-like element ISEfm1 family transposase | - |
| L1881_RS12415 (L1881_12415) | - | 2557044..2557475 (+) | 432 | Protein_2403 | minor capsid protein | - |
| L1881_RS12420 (L1881_12420) | - | 2557636..2558238 (+) | 603 | WP_235692291.1 | DUF4355 domain-containing protein | - |
| L1881_RS12425 (L1881_12425) | - | 2558253..2559140 (+) | 888 | WP_073490201.1 | phage major capsid protein | - |
| L1881_RS14125 | - | 2559152..2559418 (+) | 267 | WP_324293368.1 | putative Ig domain-containing protein | - |
| L1881_RS12435 (L1881_12435) | - | 2559434..2559763 (+) | 330 | WP_235692292.1 | phage head-tail connector protein | - |
| L1881_RS12440 (L1881_12440) | - | 2559760..2560086 (+) | 327 | WP_235692293.1 | hypothetical protein | - |
| L1881_RS12445 (L1881_12445) | - | 2560070..2560408 (+) | 339 | WP_002318275.1 | HK97-gp10 family putative phage morphogenesis protein | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17879.72 Da Isoelectric Point: 7.9972
>NTDB_id=647709 L1881_RS12320 WP_235692284.1 2547028..2547513(+) (ssb) [Enterococcus faecium strain P47]
MINTVALVGRLTKDPELRTTTSGTGVATFTLAVNRDFKDANGNREADFINCVAWRKTAEILANYTKKGSLIGLIGRIQTR
SYENQQGNRVFVTEVVVERFNLLESRSNNDTGVSNNQTTNYKGNNQNSSNDLSHAQNNQSKNVNFNPFDGPSMNTDLELP
F
MINTVALVGRLTKDPELRTTTSGTGVATFTLAVNRDFKDANGNREADFINCVAWRKTAEILANYTKKGSLIGLIGRIQTR
SYENQQGNRVFVTEVVVERFNLLESRSNNDTGVSNNQTTNYKGNNQNSSNDLSHAQNNQSKNVNFNPFDGPSMNTDLELP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=647709 L1881_RS12320 WP_235692284.1 2547028..2547513(+) (ssb) [Enterococcus faecium strain P47]
ATGATTAATACAGTGGCTTTAGTAGGAAGATTGACAAAAGACCCAGAGCTTAGAACCACAACAAGTGGAACAGGAGTAGC
GACTTTCACATTAGCAGTAAACCGTGACTTCAAAGATGCGAATGGAAATAGAGAAGCAGACTTTATCAATTGTGTAGCGT
GGAGAAAAACAGCTGAAATTTTAGCAAACTATACGAAAAAAGGTTCGTTAATTGGATTGATTGGGCGTATTCAAACCAGA
AGCTATGAAAATCAACAAGGAAACCGAGTTTTTGTGACGGAAGTAGTCGTAGAACGCTTCAATTTACTTGAGAGCCGTTC
TAACAACGATACAGGCGTTTCGAACAATCAGACGACAAATTATAAAGGGAACAACCAAAACAGCTCTAACGACTTATCAC
ACGCTCAAAACAATCAATCAAAAAACGTTAATTTCAATCCGTTTGATGGTCCGTCAATGAATACTGATTTAGAACTTCCG
TTTTAA
ATGATTAATACAGTGGCTTTAGTAGGAAGATTGACAAAAGACCCAGAGCTTAGAACCACAACAAGTGGAACAGGAGTAGC
GACTTTCACATTAGCAGTAAACCGTGACTTCAAAGATGCGAATGGAAATAGAGAAGCAGACTTTATCAATTGTGTAGCGT
GGAGAAAAACAGCTGAAATTTTAGCAAACTATACGAAAAAAGGTTCGTTAATTGGATTGATTGGGCGTATTCAAACCAGA
AGCTATGAAAATCAACAAGGAAACCGAGTTTTTGTGACGGAAGTAGTCGTAGAACGCTTCAATTTACTTGAGAGCCGTTC
TAACAACGATACAGGCGTTTCGAACAATCAGACGACAAATTATAAAGGGAACAACCAAAACAGCTCTAACGACTTATCAC
ACGCTCAAAACAATCAATCAAAAAACGTTAATTTCAATCCGTTTGATGGTCCGTCAATGAATACTGATTTAGAACTTCCG
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
51.765 |
100 |
0.547 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.163 |
100 |
0.547 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
65.839 |
0.385 |