Detailed information    

insolico Bioinformatically predicted

Overview


Name   rcrP   Type   Regulator
Locus tag   OHN37_RS14875 Genome accession   NZ_CP107878
Coordinates   3276300..3278033 (+) Length   577 a.a.
NCBI ID   WP_266513880.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00485     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context


Location: 3271300..3283033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN37_RS14865 (OHN37_14880) - 3274352..3274657 (+) 306 WP_266513874.1 YtxH domain-containing protein -
  OHN37_RS14870 (OHN37_14885) - 3274742..3276184 (+) 1443 WP_266513877.1 FGGY family carbohydrate kinase -
  OHN37_RS14875 (OHN37_14890) rcrP 3276300..3278033 (+) 1734 WP_266513880.1 ABC transporter ATP-binding protein Regulator
  OHN37_RS14880 (OHN37_14895) rcrQ 3278033..3279964 (+) 1932 WP_266513882.1 ABC transporter ATP-binding protein Regulator
  OHN37_RS14885 (OHN37_14900) - 3280019..3281320 (-) 1302 WP_266513885.1 RNA polymerase sigma factor -

Sequence


Protein


Download         Length: 577 a.a.        Molecular weight: 62487.90 Da        Isoelectric Point: 6.9037

>NTDB_id=647709 OHN37_RS14875 WP_266513880.1 3276300..3278033(+) (rcrP) [Streptomyces sp. NBC_00485]
MLIRLLRTYLRPYKKPIALLVLLQLLQTCATLYLPTLNAHIIDQGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYYGA
RTASALGRDLRASVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LIAVVPTLGICVTLIVRKLRPLFRAMQVRLDTVNRVLREQITGNRVIRAFVREEYEKDRFRKSNADLTEMQLKTGNLLAL
MFPVVMTTVNLSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PAAPVTELRRHGHLEIRGAGFRYPGAEEPVLKAVDLVARPGEVTAVIGSTGSGKSTLLGLVPRLFDATDGQVLVDGTDVA
SLEPALLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVQKLEAGLNAPISQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVATIREADRIVVLDEGLVVGTGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=647709 OHN37_RS14875 WP_266513880.1 3276300..3278033(+) (rcrP) [Streptomyces sp. NBC_00485]
GTGCTCATACGACTTCTGCGGACCTACCTCAGGCCCTACAAGAAACCCATCGCCCTGCTGGTGCTGCTGCAGCTCCTGCA
GACCTGCGCCACCCTCTATCTGCCCACTCTGAACGCCCACATCATCGACCAAGGCGTCGTGAAGGGTGACACCGGCTACA
TCCTCTCCTTCGGCGCCCTGATGATCGGCATCTCACTGGTCCAGGTCGTGTGCAACATCGGTGCCGTGTACTACGGCGCC
CGCACCGCCTCCGCACTCGGCCGGGACCTGCGCGCGTCCGTGTTCGACCGGGTGCAGTCCTTCTCGGCGCGGGAGGTCGG
TCACTTCGGCGCGCCCTCGCTGATCACCCGTACGACCAATGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGCCTGGACGTGCCGCTGTCCGGTGTG
CTGATCGCCGTGGTCCCGACGCTGGGCATCTGCGTCACGCTGATCGTGCGGAAGCTGCGACCGCTGTTCCGGGCCATGCA
GGTACGCCTGGACACGGTCAACCGGGTCCTGCGCGAGCAGATCACCGGCAACCGTGTGATCAGGGCCTTCGTGCGGGAGG
AGTACGAGAAGGACCGGTTCCGCAAGTCCAACGCCGACCTCACCGAGATGCAGCTGAAGACCGGCAACCTGCTCGCGCTG
ATGTTCCCGGTGGTCATGACCACGGTGAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCCCACCGGATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTTCTCGCCTACCTCATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGTGCCGAGCGGATCGAGGAGGTGCTCGGGACCTCCTCCAGCGTGGTGCCG
CCGGCGGCTCCGGTCACCGAGCTGCGCCGGCACGGTCACCTGGAGATCCGGGGTGCCGGGTTCCGCTATCCCGGCGCCGA
GGAGCCCGTGCTCAAGGCGGTCGACCTGGTCGCGCGGCCCGGCGAGGTGACCGCCGTCATCGGCTCGACGGGCAGTGGCA
AGTCGACGCTGCTGGGGCTCGTCCCGCGCCTGTTCGACGCCACCGACGGCCAGGTGCTCGTCGACGGCACGGACGTGGCG
TCCCTCGAACCGGCGCTGCTGGCGAAGACGGTCGGGCTGGTGCCGCAGAAGCCGTACCTGTTCGCCGGGACGGTCGCGAC
CAACCTGCGCTACGGCAATCCGGACGCCACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TGCAGAAACTCGAAGCCGGGCTCAACGCCCCGATCTCGCAGGGCGGCACGAACGTCTCCGGCGGTCAGCGGCAGCGACTC
GCCATCGCCCGGACGCTGGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGTGCGGCGCTCGCCCAGGAGACCGCGGAAGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCCACCATCC
GCGAAGCGGACCGGATCGTCGTCCTCGACGAGGGGCTTGTCGTCGGGACCGGCCGCCATCACGAGCTGATGGCGGGCAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

38.554

100

0.388