Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG250_RS18990 Genome accession   NZ_CP107877
Coordinates   4436188..4436862 (-) Length   224 a.a.
NCBI ID   WP_327728465.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00487     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4431188..4441862
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG250_RS18970 (OG250_18995) - 4432538..4432765 (+) 228 WP_326579719.1 hypothetical protein -
  OG250_RS18975 (OG250_19000) - 4432748..4433965 (-) 1218 WP_327728464.1 cytochrome P450 -
  OG250_RS18980 (OG250_19005) vraR 4434049..4434714 (-) 666 WP_326579722.1 response regulator transcription factor Regulator
  OG250_RS18985 (OG250_19010) - 4434711..4436063 (-) 1353 WP_326579724.1 histidine kinase -
  OG250_RS18990 (OG250_19015) vraR 4436188..4436862 (-) 675 WP_327728465.1 response regulator transcription factor Regulator
  OG250_RS18995 (OG250_19020) - 4436859..4438295 (-) 1437 WP_327728466.1 sensor histidine kinase -
  OG250_RS19000 (OG250_19025) - 4438306..4439553 (-) 1248 WP_327732160.1 acyltransferase -
  OG250_RS19005 (OG250_19030) - 4439828..4440736 (-) 909 WP_327732161.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24286.94 Da        Isoelectric Point: 5.3329

>NTDB_id=647647 OG250_RS18990 WP_327728465.1 4436188..4436862(-) (vraR) [Streptomyces sp. NBC_00487]
MTSSTIRVLIADDQQMVRQGFSVLLNTQPDIDVVGQAVHGLDAIDKVTELAPDVVLMDIRMPELGGIEATHRITTEHPHI
RVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVIAAGDALLAPGITRRLIAEFSRLGTTPRAPLKARVGDLT
ERETEVLSLIAQGLSNAEIAQRLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPTGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=647647 OG250_RS18990 WP_327728465.1 4436188..4436862(-) (vraR) [Streptomyces sp. NBC_00487]
ATGACGAGCAGCACCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCTCGGTGCTGCTCAACAC
CCAGCCCGACATCGACGTCGTCGGCCAGGCGGTGCACGGCCTCGACGCGATCGACAAGGTCACCGAACTCGCCCCGGACG
TCGTCCTGATGGACATCCGCATGCCCGAGCTCGGCGGCATCGAGGCCACCCACCGCATCACCACCGAGCACCCGCACATC
AGAGTCCTCGTCCTCACCACCTTCGACCTCGACGAGTACGTCTACGAGGCCCTGCGCGCCGGCGCGTCCGGCTTCCTCCT
CAAGGACGCCTCCGCCGACCAGCTCGCCGAGGCGGTACGGGTCATCGCGGCGGGCGACGCGCTGCTCGCACCCGGCATCA
CCCGCCGCCTCATCGCCGAGTTCTCCCGCCTCGGCACCACACCCCGTGCCCCCCTCAAGGCTCGCGTCGGTGATCTGACG
GAGCGGGAGACCGAGGTGCTCAGCCTGATCGCGCAGGGCCTGTCCAACGCCGAGATCGCCCAGCGTCTCGTCGTCGCCGA
ACAGACCGTGAAGACCCACGTGGGCCGCATCCTGGTCAAACTGGGCCTCCGCGACCGCACCCAGGCCGCGGTCTTCGCCT
ACGAATCGGGCCTGGTCCGCCCCACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(159-213)

Response regulator receiver domain (Response_reg)

(8-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

96.429

0.433
  degU Bacillus subtilis subsp. subtilis str. 168

40.175

100

0.411