Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG250_RS18980 Genome accession   NZ_CP107877
Coordinates   4434049..4434714 (-) Length   221 a.a.
NCBI ID   WP_326579722.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00487     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4429049..4439714
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG250_RS18960 (OG250_18985) - 4429656..4430564 (+) 909 WP_327728462.1 ABC transporter ATP-binding protein -
  OG250_RS18965 (OG250_18990) - 4430561..4432198 (+) 1638 WP_327728463.1 ABC transporter permease -
  OG250_RS18970 (OG250_18995) - 4432538..4432765 (+) 228 WP_326579719.1 hypothetical protein -
  OG250_RS18975 (OG250_19000) - 4432748..4433965 (-) 1218 WP_327728464.1 cytochrome P450 -
  OG250_RS18980 (OG250_19005) vraR 4434049..4434714 (-) 666 WP_326579722.1 response regulator transcription factor Regulator
  OG250_RS18985 (OG250_19010) - 4434711..4436063 (-) 1353 WP_326579724.1 histidine kinase -
  OG250_RS18990 (OG250_19015) vraR 4436188..4436862 (-) 675 WP_327728465.1 response regulator transcription factor Regulator
  OG250_RS18995 (OG250_19020) - 4436859..4438295 (-) 1437 WP_327728466.1 sensor histidine kinase -
  OG250_RS19000 (OG250_19025) - 4438306..4439553 (-) 1248 WP_327732160.1 acyltransferase -

Sequence

Protein


Download         Length: 221 a.a.        Molecular weight: 23810.44 Da        Isoelectric Point: 4.6426

>NTDB_id=647646 OG250_RS18980 WP_326579722.1 4434049..4434714(-) (vraR) [Streptomyces sp. NBC_00487]
MTIRVLIADDQMMVREGFSVLLGAMPDIEVVGEAVNGRDAVDRVRELSPDVVLMDIRMPELNGIEATREIVASDGGAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTKRLITEFSKLAQSPRPSAATQLAYGELTD
RETEVLVLIAQGLSNSEMAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 666 bp        

>NTDB_id=647646 OG250_RS18980 WP_326579722.1 4434049..4434714(-) (vraR) [Streptomyces sp. NBC_00487]
ATGACGATCCGCGTGCTGATCGCCGACGACCAGATGATGGTCCGCGAGGGCTTCTCCGTGCTGCTCGGCGCCATGCCGGA
CATCGAGGTGGTCGGCGAGGCGGTGAACGGCCGGGACGCGGTCGACCGGGTCCGGGAGCTGTCGCCGGACGTCGTCCTGA
TGGACATCCGGATGCCCGAGCTGAACGGCATCGAGGCCACCCGGGAGATCGTGGCGTCGGACGGCGGGGCGAAGGTGCTG
GTCCTGACCACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTGCGCGCGGGAGCCTCCGGCTTCCTCCTCAAGGACGC
CTCCGCCCGCCAACTGGCCGACGGTGTCAGGGTGGTGGCCGCCGGCGAGGCACTTCTCGCCCCGTCCGTCACCAAGCGTC
TGATCACGGAGTTCTCCAAGCTGGCCCAGTCTCCCCGCCCCTCGGCGGCCACCCAGCTGGCATACGGCGAACTCACCGAC
CGCGAGACCGAGGTCCTGGTCCTCATCGCCCAGGGCCTGTCCAACTCGGAGATGGCCGAGCGTCTGGTGGTCGCCGAGTC
CACGATCAAGACCCATGTGAGCCGGGTCCTGGTGAAGCTGGGCCTGCGCGACCGTACCCAGGCGGCCGTGTTCGCCTACG
AGGCCCGGCTGGTCACGCCCGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(158-212)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.661

98.643

0.421
  degU Bacillus subtilis subsp. subtilis str. 168

41.935

98.19

0.412