Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS25470 Genome accession   NZ_CP107869
Coordinates   5602819..5603493 (+) Length   224 a.a.
NCBI ID   WP_327718382.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5597819..5608493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS25450 (OG381_25460) - 5598112..5599356 (+) 1245 WP_327718379.1 acyltransferase -
  OG381_RS25455 (OG381_25465) - 5599397..5600686 (+) 1290 WP_327722553.1 sensor histidine kinase -
  OG381_RS25460 (OG381_25470) vraR 5600683..5601357 (+) 675 WP_327718380.1 response regulator transcription factor Regulator
  OG381_RS25465 (OG381_25475) - 5601482..5602822 (+) 1341 WP_327718381.1 histidine kinase -
  OG381_RS25470 (OG381_25480) vraR 5602819..5603493 (+) 675 WP_327718382.1 response regulator transcription factor Regulator
  OG381_RS25475 (OG381_25485) - 5603558..5603995 (+) 438 WP_327718383.1 VOC family protein -
  OG381_RS25480 (OG381_25490) - 5604078..5605280 (+) 1203 WP_327718384.1 cytochrome P450 -
  OG381_RS25485 (OG381_25495) - 5605263..5605538 (-) 276 WP_327718385.1 hypothetical protein -
  OG381_RS25490 (OG381_25500) - 5605611..5607179 (-) 1569 WP_327718386.1 ABC transporter permease -
  OG381_RS25495 (OG381_25505) - 5607176..5608093 (-) 918 WP_327718387.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24260.95 Da        Isoelectric Point: 4.7614

>NTDB_id=647555 OG381_RS25470 WP_327718382.1 5602819..5603493(+) (vraR) [Streptomyces sp. NBC_00490]
MRQGTIRVLIADDQMMVREGFSVLLNAMPDIEVVGEAVNGREAVDRVRELAPDVVLMDIRMPELNGIEATREIVAADGAA
KVLVLTTFDLDEYVYQALRAGASGFLLKDASARQLADGVRVVASGEALLAPSVTRRLITEFSKLSDSPRLMSSAHAAYGE
LTERETEVLVLIAQGLSNAEIAERLVVAESTIKTHVSRVLVKLGLRDRTQAAVFAYEARLVTPG

Nucleotide


Download         Length: 675 bp        

>NTDB_id=647555 OG381_RS25470 WP_327718382.1 5602819..5603493(+) (vraR) [Streptomyces sp. NBC_00490]
ATGAGGCAGGGCACCATCCGCGTGCTGATCGCGGACGACCAGATGATGGTGCGCGAGGGTTTCTCCGTCCTGCTCAACGC
GATGCCGGACATCGAGGTCGTCGGCGAGGCGGTCAACGGCCGCGAGGCGGTGGACCGGGTCCGTGAACTCGCCCCGGACG
TCGTGCTGATGGACATCCGCATGCCCGAGCTGAACGGGATCGAGGCGACGCGGGAGATCGTCGCGGCGGACGGTGCGGCG
AAAGTGCTGGTGCTGACGACGTTCGACCTCGACGAGTACGTGTACCAGGCGCTTCGGGCGGGCGCCTCGGGCTTCCTGCT
GAAGGACGCCTCGGCCCGTCAACTGGCGGACGGCGTGCGGGTGGTGGCCTCCGGCGAGGCCCTGCTGGCGCCCTCGGTCA
CCAGACGCCTGATCACGGAGTTCTCGAAGCTCTCCGACTCCCCCCGCCTGATGTCCTCCGCCCACGCGGCGTACGGCGAA
CTGACCGAGCGCGAGACGGAGGTCCTGGTCCTGATCGCCCAGGGTCTGTCGAACGCGGAGATAGCCGAGCGCCTGGTGGT
CGCGGAGTCCACGATCAAGACCCACGTCAGCCGGGTCCTGGTCAAGCTCGGGCTGCGGGACCGCACCCAGGCGGCGGTCT
TCGCCTACGAAGCCCGCCTGGTGACGCCGGGCTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.318

96.875

0.42
  degU Bacillus subtilis subsp. subtilis str. 168

42.857

96.875

0.415