Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG381_RS25460 Genome accession   NZ_CP107869
Coordinates   5600683..5601357 (+) Length   224 a.a.
NCBI ID   WP_327718380.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00490     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 5595683..5606357
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG381_RS25435 (OG381_25445) - 5595898..5596797 (+) 900 WP_327718376.1 alpha/beta hydrolase -
  OG381_RS25440 (OG381_25450) - 5596856..5597155 (-) 300 WP_327718377.1 hypothetical protein -
  OG381_RS25445 (OG381_25455) - 5597130..5598119 (+) 990 WP_327718378.1 alpha/beta hydrolase -
  OG381_RS25450 (OG381_25460) - 5598112..5599356 (+) 1245 WP_327718379.1 acyltransferase -
  OG381_RS25455 (OG381_25465) - 5599397..5600686 (+) 1290 WP_327722553.1 sensor histidine kinase -
  OG381_RS25460 (OG381_25470) vraR 5600683..5601357 (+) 675 WP_327718380.1 response regulator transcription factor Regulator
  OG381_RS25465 (OG381_25475) - 5601482..5602822 (+) 1341 WP_327718381.1 histidine kinase -
  OG381_RS25470 (OG381_25480) vraR 5602819..5603493 (+) 675 WP_327718382.1 response regulator transcription factor Regulator
  OG381_RS25475 (OG381_25485) - 5603558..5603995 (+) 438 WP_327718383.1 VOC family protein -
  OG381_RS25480 (OG381_25490) - 5604078..5605280 (+) 1203 WP_327718384.1 cytochrome P450 -
  OG381_RS25485 (OG381_25495) - 5605263..5605538 (-) 276 WP_327718385.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24129.81 Da        Isoelectric Point: 4.8384

>NTDB_id=647554 OG381_RS25460 WP_327718380.1 5600683..5601357(+) (vraR) [Streptomyces sp. NBC_00490]
MTSSPIRVLIADDQQMVRQGFTVLLNTQPDIDVVGQAVDGLDAVAKVAELAPDVVLMDIRMPELGGIEATRRITRATPGI
RVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLITEFSRLGDRPRGPLKERVGDLT
ERETEVLALIAAGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=647554 OG381_RS25460 WP_327718380.1 5600683..5601357(+) (vraR) [Streptomyces sp. NBC_00490]
ATGACGAGCAGCCCCATCCGCGTACTCATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCTCAACAC
CCAGCCGGACATCGACGTGGTCGGCCAGGCGGTCGACGGTCTGGACGCCGTGGCGAAGGTCGCCGAACTCGCCCCGGACG
TCGTGCTGATGGACATCCGCATGCCCGAGCTCGGCGGCATCGAGGCCACCCGCCGCATCACCCGGGCGACCCCCGGGATC
AGGGTGCTCGTGCTGACCACCTTCGACCTCGACGAGTACGTCTACGAGGCACTGCGCGCCGGTGCCTCCGGCTTCCTCCT
CAAGGACGCCTCCGCGGACCAGCTGGCCGAGGCGGTCCGGGTGGTGGCGGCCGGCGACGCCCTCCTCGCGCCCGGCATCA
CACGGCGCCTGATCACCGAGTTCTCCCGCCTCGGCGATCGCCCCCGCGGCCCGCTCAAGGAACGCGTCGGCGACCTCACC
GAGCGCGAGACCGAGGTTCTGGCGCTCATCGCGGCGGGCCTGTCGAACGCGGAGATCGCCGAGCGGCTGGTGGTGGCGGA
GCAGACGGTGAAGACCCATGTGGGGCGGATCCTGGTGAAGCTGGGGCTGCGGGACCGCACCCAGGCGGCGGTGTTCGCGT
ACGAGTCGGGGCTGGTGCGGCCGTCGGGGTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.651

95.982

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.411