Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   L1O02_RS21925 Genome accession   NZ_CP091067
Coordinates   4886352..4888568 (-) Length   738 a.a.
NCBI ID   WP_235758704.1    Uniprot ID   -
Organism   Pseudomonas sp. BC42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4881352..4893568
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O02_RS21890 (L1O02_21890) murB 4881714..4882733 (-) 1020 WP_060838231.1 UDP-N-acetylmuramate dehydrogenase -
  L1O02_RS21895 (L1O02_21895) - 4882730..4883194 (-) 465 WP_060842854.1 low molecular weight protein-tyrosine-phosphatase -
  L1O02_RS21900 (L1O02_21900) kdsB 4883194..4883958 (-) 765 WP_235758700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L1O02_RS21905 (L1O02_21905) - 4883955..4884140 (-) 186 WP_011060103.1 Trm112 family protein -
  L1O02_RS21910 (L1O02_21910) lpxK 4884164..4885174 (-) 1011 WP_235758702.1 tetraacyldisaccharide 4'-kinase -
  L1O02_RS21915 (L1O02_21915) - 4885174..4885602 (-) 429 WP_060838227.1 biopolymer transporter ExbD -
  L1O02_RS21920 (L1O02_21920) exbB 4885599..4886234 (-) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L1O02_RS21925 (L1O02_21925) comA 4886352..4888568 (-) 2217 WP_235758704.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1O02_RS21930 (L1O02_21930) - 4888708..4889223 (+) 516 WP_235758706.1 DUF2062 domain-containing protein -
  L1O02_RS21935 (L1O02_21935) - 4889277..4890056 (-) 780 WP_060838224.1 ABC transporter permease -
  L1O02_RS21940 (L1O02_21940) - 4890053..4890985 (-) 933 WP_060838223.1 ABC transporter ATP-binding protein -
  L1O02_RS21945 (L1O02_21945) - 4891117..4891740 (-) 624 WP_235758708.1 glutathione S-transferase -
  L1O02_RS21950 (L1O02_21950) - 4891783..4892442 (-) 660 WP_235758710.1 transglutaminase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80724.97 Da        Isoelectric Point: 11.5016

>NTDB_id=647482 L1O02_RS21925 WP_235758704.1 4886352..4888568(-) (comA) [Pseudomonas sp. BC42]
MGTGLLALAAGLLALGFLPVLPPVWLLLALAVVGLMLLPFRTHPVAFFLFGFAWACVSGHWALNDRLAPGLEGQTRWLEG
QVSGLPEQGQGVVRFELQGAQARRERLPRRIRLAWHDAPPLHSGERWRLAVTLRRPAGLLNVQGFDHQAWLLARRIGATG
TVKAGQLLRPARLAWREGLRQHLLGVEAQGRGAGLAALVMGDGSGLTRQDWQVLQDTGTVHLMVISGQHISLLAGVIYLG
VAGLARWGIWPERRPWLPWACALAFLGALGYGLLAGFDVPVQRACVMVALVLLWRLRFRHLGVWRPWLLALNAVLLFEPL
ASLQPGFWLSFAAVAILLLTFGGRLGRWRWWQAWSRAQWLIAIGLLPPLLALGLPISFSGPLANLLAVPWISLLVLPPAL
LGCLLLPVPHVGEGLLWLAGGLLDGLFLLLGTIAGAWPAWVAPLLPWWLWGLSALGALLLLLPSGVPLRVLGWPLLLLAI
WPPEQVLPEGEVEVWQLDVGQGLSMLLRTRDHAMLYDAGARVGDFDLGERVVLPSLRKLGIRQLDLMLLSHADNDHAGGA
LAVWRGIDVARVRSGEPGALPDALQAQPCESGLGWQWNGVRFRLWQWPAAADGNQASCVLQVEARGERLLLTGDIDVHAE
RALLASPLAVHTHWLQAPHHGSRTSSSMALLQRLRPTAVLISRGRGNAFGHPHAEVLARYRRLGVVVHDSADQGALKLRL
GTFGPVQSLRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=647482 L1O02_RS21925 WP_235758704.1 4886352..4888568(-) (comA) [Pseudomonas sp. BC42]
ATGGGGACGGGGTTGCTGGCACTGGCCGCGGGGCTGCTGGCGCTGGGTTTTCTACCGGTGTTGCCGCCGGTCTGGCTGTT
GCTGGCGTTGGCGGTCGTGGGGCTGATGCTGCTGCCGTTTCGTACACATCCCGTGGCATTTTTTCTCTTCGGTTTCGCCT
GGGCTTGCGTTTCCGGGCATTGGGCCCTGAATGATCGCCTGGCTCCTGGCCTGGAAGGACAGACCCGCTGGCTGGAGGGG
CAGGTCAGTGGTTTGCCGGAGCAGGGCCAGGGCGTGGTGCGCTTTGAGCTGCAGGGTGCCCAGGCGCGACGCGAGCGTCT
GCCGCGGCGGATACGCCTGGCCTGGCACGACGCCCCGCCGCTGCACAGTGGCGAGCGCTGGCGCCTGGCGGTCACGTTGC
GGCGTCCTGCCGGGCTGCTCAATGTCCAGGGGTTCGATCACCAGGCCTGGCTGCTGGCGCGGCGCATCGGGGCCACCGGC
ACGGTCAAGGCCGGGCAGTTGCTCAGGCCCGCCCGCCTGGCCTGGCGCGAGGGCCTGCGCCAGCACCTGCTGGGTGTCGA
GGCACAAGGGCGTGGCGCCGGGCTGGCGGCACTGGTGATGGGTGACGGCTCGGGGCTGACGCGCCAGGACTGGCAGGTGC
TGCAGGACACCGGCACGGTTCACCTGATGGTGATTTCCGGTCAGCACATCAGCCTGCTGGCCGGGGTGATCTACCTCGGG
GTGGCCGGGCTCGCCCGCTGGGGCATCTGGCCCGAGCGCCGGCCATGGCTGCCCTGGGCCTGTGCCCTGGCCTTTCTCGG
GGCTCTGGGCTACGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCAACGGGCTTGCGTGATGGTCGCCCTGGTCCTGCTCT
GGCGGCTGCGCTTTCGCCATCTGGGCGTCTGGCGACCCTGGCTGCTGGCGTTGAATGCGGTGTTGCTGTTCGAGCCCCTG
GCCAGTCTGCAGCCGGGATTCTGGCTGTCCTTTGCCGCGGTGGCGATCCTGCTTCTCACCTTCGGCGGGCGCCTGGGGCG
CTGGCGCTGGTGGCAGGCCTGGAGCCGTGCGCAGTGGCTGATCGCCATTGGCTTGCTGCCGCCGCTGCTGGCCCTGGGGC
TGCCCATCAGTTTCAGCGGTCCCCTGGCCAATCTGCTGGCGGTGCCGTGGATCAGTCTGCTGGTGCTGCCGCCGGCCCTG
CTGGGTTGTCTGTTGCTGCCGGTGCCACATGTGGGCGAGGGTTTGCTGTGGCTGGCCGGGGGGCTGCTGGATGGGCTGTT
CCTTCTGTTGGGGACGATCGCCGGTGCCTGGCCGGCCTGGGTGGCGCCGTTGCTGCCCTGGTGGCTTTGGGGGCTCAGTG
CCCTGGGGGCCTTGCTGTTGCTCCTGCCCAGCGGTGTACCGCTGCGGGTGCTGGGGTGGCCGCTGTTGCTATTGGCCATC
TGGCCGCCCGAGCAAGTGCTGCCCGAGGGTGAGGTGGAGGTCTGGCAACTGGACGTGGGGCAGGGGCTGTCGATGCTCCT
GCGCACCCGCGATCACGCCATGCTCTACGATGCCGGCGCCCGGGTGGGGGATTTCGATCTCGGCGAGCGGGTGGTGCTGC
CCAGCTTGCGCAAGCTGGGGATCAGGCAGCTGGACCTGATGCTGCTCAGTCATGCCGACAACGATCATGCCGGTGGCGCC
CTGGCGGTCTGGCGCGGAATCGATGTGGCCCGGGTGCGCAGCGGCGAGCCCGGGGCATTGCCCGACGCCCTGCAAGCACA
GCCTTGCGAGTCGGGCCTGGGCTGGCAATGGAATGGGGTGCGCTTTCGGCTGTGGCAATGGCCGGCGGCGGCCGATGGCA
ACCAGGCTTCCTGCGTGTTGCAGGTCGAGGCTCGGGGCGAGCGGCTGTTGCTCACCGGCGACATCGACGTGCATGCCGAA
CGGGCATTGCTCGCCAGTCCGCTGGCGGTTCACACCCACTGGTTGCAGGCCCCCCATCATGGCAGTCGCACTTCTTCGTC
CATGGCCCTGCTGCAACGCCTGCGACCGACCGCGGTGCTGATTTCCCGCGGGCGGGGCAATGCCTTCGGTCATCCCCATG
CCGAGGTACTGGCGCGCTATCGACGGCTGGGGGTGGTTGTGCATGACAGCGCCGATCAAGGAGCGCTGAAACTGCGCCTG
GGGACTTTCGGGCCCGTGCAAAGCCTGCGCGCGCAGCGGCGTTTCTGGCGCGATTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

63.585

96.748

0.615
  comA Ralstonia pseudosolanacearum GMI1000

32.812

100

0.37