Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   L1O02_RS21920 Genome accession   NZ_CP091067
Coordinates   4885599..4886234 (-) Length   211 a.a.
NCBI ID   WP_016968261.1    Uniprot ID   A0AAD1B7L4
Organism   Pseudomonas sp. BC42     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4880599..4891234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O02_RS21885 (L1O02_21885) - 4880992..4881462 (-) 471 WP_016968267.1 (2Fe-2S)-binding protein -
  L1O02_RS21890 (L1O02_21890) murB 4881714..4882733 (-) 1020 WP_060838231.1 UDP-N-acetylmuramate dehydrogenase -
  L1O02_RS21895 (L1O02_21895) - 4882730..4883194 (-) 465 WP_060842854.1 low molecular weight protein-tyrosine-phosphatase -
  L1O02_RS21900 (L1O02_21900) kdsB 4883194..4883958 (-) 765 WP_235758700.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  L1O02_RS21905 (L1O02_21905) - 4883955..4884140 (-) 186 WP_011060103.1 Trm112 family protein -
  L1O02_RS21910 (L1O02_21910) lpxK 4884164..4885174 (-) 1011 WP_235758702.1 tetraacyldisaccharide 4'-kinase -
  L1O02_RS21915 (L1O02_21915) - 4885174..4885602 (-) 429 WP_060838227.1 biopolymer transporter ExbD -
  L1O02_RS21920 (L1O02_21920) exbB 4885599..4886234 (-) 636 WP_016968261.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  L1O02_RS21925 (L1O02_21925) comA 4886352..4888568 (-) 2217 WP_235758704.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  L1O02_RS21930 (L1O02_21930) - 4888708..4889223 (+) 516 WP_235758706.1 DUF2062 domain-containing protein -
  L1O02_RS21935 (L1O02_21935) - 4889277..4890056 (-) 780 WP_060838224.1 ABC transporter permease -
  L1O02_RS21940 (L1O02_21940) - 4890053..4890985 (-) 933 WP_060838223.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23019.19 Da        Isoelectric Point: 7.4247

>NTDB_id=647481 L1O02_RS21920 WP_016968261.1 4885599..4886234(-) (exbB) [Pseudomonas sp. BC42]
MWELVKSGGWMMLPIILSSIAAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMTTNAHVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVIQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=647481 L1O02_RS21920 WP_016968261.1 4885599..4886234(-) (exbB) [Pseudomonas sp. BC42]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCTGTGGGCATCATTGC
CGAGCGTTTGTGGACCCTGCGGGCCAGCCGGGTCACCCCGCCCCATCTGTTGGGTCAGGTCTGGCGCTGGATCAAGGACA
AGCAACTGAACAAGGAAAAGCTCAAGGAGCTGCGCGCCGATTCGCCCCTGGGGGAGATCCTGGCCGCGGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAATGCATTGAAGAGGCGGCGGCCCGCGTGATCCACGAGCTGGAGCGCTACCT
CAATGCCCTCGGCACCATCGCCGCCATGGCCCCGCTGCTGGGCCTCTTGGGCACTGTGCTGGGCATGATCGACATCTTCA
GTTCGTTCATGGGCTCGGGCATGACCACCAACGCCCACGTGCTGGCCGGCGGTATTTCCAAGGCCTTGATCACCACTGCC
GCGGGCCTGATGGTGGGGATTCCTTCGGTGTTCTTCCACCGCTTCCTGCAACGTCGGGTCGATGAGCTGGTGGTGGGCAT
GGAACAGGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGTGACCGCGATGTCGACCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.678

100

0.877