Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   OHQ36_RS37090 Genome accession   NZ_CP107860
Coordinates   8244975..8245622 (+) Length   215 a.a.
NCBI ID   WP_330307927.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00500     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8239975..8250622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHQ36_RS37070 (OHQ36_37085) - 8240851..8240994 (-) 144 WP_330307923.1 hypothetical protein -
  OHQ36_RS37075 (OHQ36_37090) - 8241236..8242159 (-) 924 WP_330307924.1 LLM class F420-dependent oxidoreductase -
  OHQ36_RS37080 (OHQ36_37095) - 8242406..8243551 (+) 1146 WP_330307925.1 extracellular solute-binding protein -
  OHQ36_RS37085 (OHQ36_37100) - 8243701..8244978 (+) 1278 WP_330307926.1 sensor histidine kinase -
  OHQ36_RS37090 (OHQ36_37105) letA 8244975..8245622 (+) 648 WP_330307927.1 response regulator transcription factor Regulator
  OHQ36_RS37095 (OHQ36_37110) - 8245918..8247396 (+) 1479 WP_330307928.1 3' terminal RNA ribose 2'-O-methyltransferase Hen1 -
  OHQ36_RS37100 (OHQ36_37115) - 8247393..8249939 (+) 2547 WP_330307929.1 polynucleotide kinase-phosphatase -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 22921.41 Da        Isoelectric Point: 6.1344

>NTDB_id=647116 OHQ36_RS37090 WP_330307927.1 8244975..8245622(+) (letA) [Streptomyces sp. NBC_00500]
MTAEPLRVLIADDHAVVRAGLRALLEGEPDLDVVAEAHSGEEAVRLTAQLTPDVALMDLRFAGPGDGIDGVEATRRLAVR
APRVAVVILTSYAGRADVVRALEAGARGYVLKAGPPEELFRAVRTAAAGSMGLAPEIVGELVGQVVSPRHDLSDREIEVV
RLMAEGRSNRAIAEALFLSEATIKTHLVRVYRKLKVDNRAAAVAEAVRRGVLELT

Nucleotide


Download         Length: 648 bp        

>NTDB_id=647116 OHQ36_RS37090 WP_330307927.1 8244975..8245622(+) (letA) [Streptomyces sp. NBC_00500]
ATGACCGCCGAACCGCTTCGCGTCCTGATCGCGGACGACCACGCCGTCGTACGTGCCGGACTGCGCGCCCTCCTGGAGGG
CGAACCCGACCTCGATGTGGTCGCCGAGGCGCACAGCGGTGAGGAAGCCGTCCGCCTGACCGCCCAGCTGACGCCGGACG
TCGCGCTGATGGATCTGCGGTTCGCCGGGCCGGGCGACGGCATCGACGGCGTCGAGGCGACCCGCCGGCTCGCCGTCAGG
GCCCCGCGCGTGGCCGTGGTGATACTGACCAGCTATGCCGGACGGGCCGACGTCGTCCGCGCGTTGGAGGCAGGCGCCCG
TGGCTACGTACTCAAGGCGGGACCGCCCGAGGAGCTCTTCCGGGCGGTCCGCACCGCCGCCGCCGGTTCCATGGGGCTCG
CCCCGGAGATCGTCGGTGAACTCGTCGGCCAAGTGGTCAGCCCGCGGCACGACTTGAGCGACCGCGAGATCGAGGTCGTC
CGGCTGATGGCCGAGGGTCGCAGCAACCGCGCCATCGCCGAGGCCCTGTTCCTCAGCGAGGCCACGATCAAGACCCATCT
CGTCCGCGTCTACCGCAAACTCAAGGTCGACAACCGGGCGGCGGCGGTCGCGGAGGCCGTCCGCCGAGGCGTCCTCGAAC
TCACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-205)

Response regulator receiver domain (Response_reg)

(8-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

37.559

99.07

0.372
  letA Legionella pneumophila strain ERS1305867

37.559

99.07

0.372
  degU Bacillus subtilis subsp. subtilis str. 168

34.934

100

0.372