Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS20215 Genome accession   NZ_CP107855
Coordinates   4309894..4310580 (-) Length   228 a.a.
NCBI ID   WP_330300989.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4304894..4315580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS20195 (OG490_20170) - 4305156..4306118 (+) 963 WP_330297695.1 ABC transporter ATP-binding protein -
  OG490_RS20200 (OG490_20175) - 4306115..4307719 (+) 1605 WP_330297696.1 ABC transporter permease -
  OG490_RS20205 (OG490_20180) vraR 4307826..4308485 (-) 660 WP_330297697.1 response regulator transcription factor Regulator
  OG490_RS20210 (OG490_20185) - 4308482..4309804 (-) 1323 WP_330297698.1 histidine kinase -
  OG490_RS20215 (OG490_20190) vraR 4309894..4310580 (-) 687 WP_330300989.1 response regulator transcription factor Regulator
  OG490_RS20220 (OG490_20195) - 4310592..4311953 (-) 1362 WP_330297699.1 sensor histidine kinase -
  OG490_RS20225 (OG490_20200) - 4311964..4313280 (-) 1317 WP_330297700.1 acyltransferase -
  OG490_RS20230 (OG490_20205) - 4313267..4314337 (-) 1071 WP_330297701.1 alpha/beta hydrolase -
  OG490_RS20235 (OG490_20210) - 4314578..4314979 (-) 402 WP_330297702.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 24116.98 Da        Isoelectric Point: 4.6889

>NTDB_id=646988 OG490_RS20215 WP_330300989.1 4309894..4310580(-) (vraR) [Streptomyces sp. NBC_00503]
MTGPIANAPIKVMIVDDQMMVRQGFTVLLNAQPDIEVVGQAVDGAEAVAKVSELAPDVVLMDIRMPGMGGIEATGLITGV
PGATVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVIAAGDALLAPNITKRLITEFSRLGAPRGPSKARI
EELTERETEVLSLVAQGLSNAEIAGHLVLAEQTVKTHVGRILVKLGLRDRTQAAVFAYETGLIRPTGY

Nucleotide


Download         Length: 687 bp        

>NTDB_id=646988 OG490_RS20215 WP_330300989.1 4309894..4310580(-) (vraR) [Streptomyces sp. NBC_00503]
ATGACTGGACCGATCGCGAACGCCCCGATCAAGGTGATGATCGTCGACGACCAGATGATGGTCCGCCAGGGCTTCACCGT
GCTCCTCAACGCCCAGCCCGACATCGAGGTCGTCGGCCAGGCCGTCGACGGCGCCGAGGCCGTGGCGAAGGTCTCCGAAC
TGGCGCCGGACGTGGTCCTGATGGACATCCGCATGCCCGGCATGGGCGGTATCGAGGCCACGGGCCTGATCACCGGCGTC
CCCGGAGCCACGGTGAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTCTACGAGGCGCTGCGCGCCGGAGC
CTCGGGGTTCCTCCTCAAGGACGCCTCGGCGGACCAGTTGGCCGAGGCGGTCCGGGTGATCGCGGCCGGTGACGCGCTCC
TCGCACCGAACATCACCAAGCGGCTGATCACCGAGTTCTCCCGGCTGGGAGCTCCGCGCGGGCCTTCGAAGGCGCGGATC
GAGGAGCTGACGGAGCGGGAGACGGAGGTGCTGTCGCTGGTCGCCCAGGGCCTGTCGAACGCGGAGATCGCCGGGCACCT
GGTCCTGGCCGAGCAGACGGTGAAGACGCATGTGGGCCGGATCCTGGTGAAGCTGGGTCTGCGGGACCGCACGCAGGCCG
CGGTGTTCGCTTACGAAACGGGTCTGATCCGTCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-217)

Response regulator receiver domain (Response_reg)

(12-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.7

95.175

0.425
  degU Bacillus subtilis subsp. subtilis str. 168

41.778

98.684

0.412