Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KB232_RS03910 Genome accession   NZ_CP090989
Coordinates   847317..847712 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain 52B     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 842317..852712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB232_RS03885 (KB232_03885) - 843736..844140 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  KB232_RS03890 (KB232_03890) - 844289..844522 (+) 234 WP_002456242.1 DUF1146 family protein -
  KB232_RS03895 (KB232_03895) murA 844632..845897 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  KB232_RS03900 (KB232_03900) fabZ 845931..846368 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  KB232_RS03905 (KB232_03905) - 846686..847126 (-) 441 WP_001829935.1 YwpF-like family protein -
  KB232_RS03910 (KB232_03910) ssb 847317..847712 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  KB232_RS03915 (KB232_03915) - 848100..848759 (+) 660 WP_001829904.1 transglycosylase family protein -
  KB232_RS03920 (KB232_03920) tenA 849043..849732 (+) 690 WP_001829894.1 thiaminase II -
  KB232_RS03925 (KB232_03925) thiD 849725..850546 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  KB232_RS03930 (KB232_03930) thiM 850539..851327 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  KB232_RS03935 (KB232_03935) thiE 851333..851971 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=646988 KB232_RS03910 WP_002457121.1 847317..847712(+) (ssb) [Staphylococcus epidermidis strain 52B]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=646988 KB232_RS03910 WP_002457121.1 847317..847712(+) (ssb) [Staphylococcus epidermidis strain 52B]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733