Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG490_RS20205 Genome accession   NZ_CP107855
Coordinates   4307826..4308485 (-) Length   219 a.a.
NCBI ID   WP_330297697.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4302826..4313485
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS20180 (OG490_20155) - 4302952..4303614 (+) 663 WP_330297692.1 hypothetical protein -
  OG490_RS20185 (OG490_20160) - 4303838..4304551 (+) 714 WP_330297693.1 HAD family hydrolase -
  OG490_RS20190 (OG490_20165) - 4304580..4305080 (-) 501 WP_330297694.1 MarR family transcriptional regulator -
  OG490_RS20195 (OG490_20170) - 4305156..4306118 (+) 963 WP_330297695.1 ABC transporter ATP-binding protein -
  OG490_RS20200 (OG490_20175) - 4306115..4307719 (+) 1605 WP_330297696.1 ABC transporter permease -
  OG490_RS20205 (OG490_20180) vraR 4307826..4308485 (-) 660 WP_330297697.1 response regulator transcription factor Regulator
  OG490_RS20210 (OG490_20185) - 4308482..4309804 (-) 1323 WP_330297698.1 histidine kinase -
  OG490_RS20215 (OG490_20190) vraR 4309894..4310580 (-) 687 WP_330300989.1 response regulator transcription factor Regulator
  OG490_RS20220 (OG490_20195) - 4310592..4311953 (-) 1362 WP_330297699.1 sensor histidine kinase -
  OG490_RS20225 (OG490_20200) - 4311964..4313280 (-) 1317 WP_330297700.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23543.24 Da        Isoelectric Point: 4.5497

>NTDB_id=646987 OG490_RS20205 WP_330297697.1 4307826..4308485(-) (vraR) [Streptomyces sp. NBC_00503]
MTIRVLIVDDQMMVREGFSVLLNAMEGIEVVGEAVNGREAIAQVAALKPDVVLMDIRMPEMNGLEATRAIVAADADAKVL
VLTTFDLDEYVYQALQAGASGFLLKDASARQLADGVRVVAAGEALLAPSVTRRLITEFAKLSGTRVFTSSEGTGELTERE
TEVLVLIAQGLSNAEIADRLIIAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=646987 OG490_RS20205 WP_330297697.1 4307826..4308485(-) (vraR) [Streptomyces sp. NBC_00503]
ATGACGATCCGGGTGCTGATCGTCGACGACCAGATGATGGTTCGAGAGGGGTTCTCCGTCCTCCTGAACGCGATGGAGGG
CATCGAGGTGGTCGGGGAGGCGGTGAACGGGCGCGAGGCCATCGCGCAGGTGGCGGCGCTGAAACCGGACGTGGTCCTGA
TGGACATCCGGATGCCGGAGATGAACGGCCTGGAGGCGACCCGGGCGATCGTGGCCGCCGACGCGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCAGGCCGGGGCTTCCGGATTCCTCCTCAAGGACGC
CTCCGCCCGGCAACTGGCCGACGGGGTAAGGGTGGTGGCCGCCGGTGAGGCGCTGCTGGCCCCCTCGGTGACCAGGCGGC
TGATCACCGAGTTCGCGAAGCTCTCGGGCACCCGGGTGTTCACGAGCAGCGAGGGGACCGGGGAGTTGACGGAGCGGGAG
ACGGAGGTGCTGGTGCTGATCGCGCAGGGACTGTCCAATGCGGAGATAGCCGACCGGCTGATCATCGCCGAGTCCACGAT
CAAGACCCACGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGCACGCAGGCCGCGGTGTTCGCCTACGAGACCC
GGCTGGTGACCCCGGCCTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-114)

Bacterial regulatory proteins, luxR family (GerE)

(156-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.296

98.63

0.457
  degU Bacillus subtilis subsp. subtilis str. 168

42.152

100

0.429