Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   OG490_RS12720 Genome accession   NZ_CP107855
Coordinates   2720119..2721405 (-) Length   428 a.a.
NCBI ID   WP_330296398.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00503     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2715119..2726405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG490_RS12705 (OG490_12690) - 2715656..2716225 (+) 570 WP_330296395.1 vitamin K epoxide reductase family protein -
  OG490_RS12710 (OG490_12695) - 2716313..2718934 (-) 2622 WP_330296396.1 valine--tRNA ligase -
  OG490_RS12715 (OG490_12700) - 2719062..2720033 (+) 972 WP_330296397.1 hypothetical protein -
  OG490_RS12720 (OG490_12705) clpX 2720119..2721405 (-) 1287 WP_330296398.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG490_RS12725 (OG490_12710) clpP 2721559..2722230 (-) 672 WP_330296399.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG490_RS12730 (OG490_12715) - 2722313..2722930 (-) 618 WP_250739480.1 ATP-dependent Clp protease proteolytic subunit -
  OG490_RS12735 (OG490_12720) tig 2723228..2724631 (-) 1404 WP_330296400.1 trigger factor -
  OG490_RS12750 (OG490_12735) - 2725243..2725479 (+) 237 WP_330296401.1 hypothetical protein -
  OG490_RS12755 (OG490_12740) - 2725535..2725729 (-) 195 WP_330296402.1 hypothetical protein -
  OG490_RS12760 (OG490_12745) - 2725860..2726336 (-) 477 WP_330296403.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 428 a.a.        Molecular weight: 46941.81 Da        Isoelectric Point: 4.7699

>NTDB_id=646972 OG490_RS12720 WP_330296398.1 2720119..2721405(-) (clpX) [Streptomyces sp. NBC_00503]
MARIGDGGDLLKCSFCGKSQKQVKKLIAGPGVYICDECIDLCNEIIEEELAETSEVRWEELPKPREIYEFLESYVVGQEP
AKKALSVAVYNHYKRVQAGENGGGTGRDDAIELAKSNILLLGPTGSGKTLLAQTLARMLNVPFAIADATALTEAGYVGED
VENILLKLIQAADYDVKKAETGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTTASVPPQGGRKHPHQEFIQ
IDTTNVLFIVGGAFSGLERIIESRAGAKGIGFGATIRSKREIEASNQFQEVMPEDLVKFGMIPEFIGRLPVITSVHNLDR
EALLQILIEPRNALVKQYQRLFELDGVELDFEREALEAIADQAILRQTGARGLRAIMEEVLMSVMYEVPSRKDVARVVIT
SDVVRSNVNPTLVPRIVPKDQGPQEKSA

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=646972 OG490_RS12720 WP_330296398.1 2720119..2721405(-) (clpX) [Streptomyces sp. NBC_00503]
GTGGCACGCATCGGTGACGGCGGCGACCTGCTCAAGTGCTCGTTCTGCGGAAAGAGCCAGAAGCAGGTGAAGAAGCTCAT
CGCGGGACCCGGTGTGTACATCTGCGACGAGTGCATCGACCTCTGCAACGAGATCATCGAAGAGGAACTCGCGGAGACCT
CCGAGGTCCGCTGGGAAGAGCTTCCCAAGCCGCGGGAGATCTACGAGTTCCTGGAGAGCTACGTCGTCGGCCAGGAGCCG
GCGAAGAAGGCGCTCTCCGTAGCGGTGTACAACCACTACAAGCGCGTCCAGGCCGGCGAGAACGGCGGCGGGACGGGCCG
CGACGACGCGATCGAGCTCGCGAAGTCCAACATCCTGCTGCTGGGCCCCACGGGCTCCGGCAAGACCCTCCTCGCGCAGA
CCCTCGCCCGGATGCTCAACGTCCCGTTCGCCATCGCCGACGCGACGGCGCTGACGGAGGCCGGGTACGTCGGCGAGGAC
GTCGAGAACATCCTGCTCAAGCTGATCCAGGCCGCTGACTACGACGTCAAGAAGGCCGAAACCGGGATCATCTACATCGA
CGAGATCGACAAGGTCGCCCGCAAGAGCGAGAACCCGTCGATCACGCGCGACGTGAGCGGCGAGGGCGTGCAGCAGGCCC
TCCTGAAGATCCTGGAAGGCACGACCGCTTCGGTACCGCCGCAGGGCGGCCGCAAGCACCCGCACCAGGAGTTCATCCAG
ATCGACACGACGAACGTGCTGTTCATCGTGGGCGGCGCCTTCTCCGGCCTGGAGCGGATCATCGAGTCCCGCGCCGGCGC
CAAGGGCATCGGCTTCGGGGCGACGATCCGCTCGAAGCGCGAGATCGAGGCGAGCAACCAGTTCCAGGAGGTCATGCCGG
AGGACCTGGTGAAGTTCGGGATGATCCCCGAGTTCATCGGCCGTCTCCCCGTCATCACCTCGGTGCACAACCTGGACCGC
GAGGCCCTGCTCCAGATCCTCATCGAGCCGCGCAACGCGCTGGTCAAGCAGTACCAGCGGCTGTTCGAACTCGACGGCGT
CGAGCTGGACTTCGAGCGCGAGGCCCTCGAAGCCATCGCCGACCAGGCGATCCTCCGCCAGACCGGCGCGCGCGGCCTGC
GCGCCATCATGGAAGAGGTCCTGATGTCGGTGATGTACGAGGTCCCGTCCCGCAAGGACGTGGCCCGCGTGGTCATCACC
TCGGACGTGGTCCGCTCCAACGTCAACCCGACGCTGGTCCCCCGGATCGTCCCGAAGGACCAGGGGCCGCAGGAGAAGTC
GGCGTAA

Domains

Predicted by InterProScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(115-312)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-48)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(318-395)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

63.682

93.925

0.598
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

54.015

96.028

0.519