Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS17580 Genome accession   NZ_CP107845
Coordinates   3815552..3816211 (+) Length   219 a.a.
NCBI ID   WP_053676953.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3810552..3821211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS17560 (OHA84_17525) - 3810914..3812116 (+) 1203 WP_266970864.1 acyltransferase -
  OHA84_RS17565 (OHA84_17530) - 3812235..3813449 (+) 1215 WP_266970862.1 sensor histidine kinase -
  OHA84_RS17570 (OHA84_17535) vraR 3813449..3814138 (+) 690 WP_266970860.1 response regulator transcription factor Regulator
  OHA84_RS17575 (OHA84_17540) - 3814275..3815555 (+) 1281 WP_266948309.1 histidine kinase -
  OHA84_RS17580 (OHA84_17545) vraR 3815552..3816211 (+) 660 WP_053676953.1 response regulator transcription factor Regulator
  OHA84_RS17585 (OHA84_17550) - 3816551..3817753 (+) 1203 WP_266948312.1 cytochrome P450 -
  OHA84_RS17590 (OHA84_17555) - 3817799..3819424 (-) 1626 WP_371591404.1 ABC transporter permease -
  OHA84_RS17595 (OHA84_17560) - 3819541..3820467 (-) 927 WP_053676956.1 ABC transporter ATP-binding protein -
  OHA84_RS17600 (OHA84_17565) - 3820540..3821022 (+) 483 WP_266948316.1 GbsR/MarR family transcriptional regulator -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23697.55 Da        Isoelectric Point: 4.7252

>NTDB_id=646909 OHA84_RS17580 WP_053676953.1 3815552..3816211(+) (vraR) [Streptomyces sp. NBC_00513]
MTIRVLIVDDQMMVREGFSVLLNAMEGIEVVGEAVDGRQAIAQVAALRPDVVLMDIRMPEMNGLEATRRIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVAAGEALLAPSVTKRLIVEFSKLAESPRLSDPAGVAQLTERE
TEVLILIAQGLTNAEIADRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=646909 OHA84_RS17580 WP_053676953.1 3815552..3816211(+) (vraR) [Streptomyces sp. NBC_00513]
ATGACGATCAGGGTCTTGATCGTCGACGACCAGATGATGGTCAGGGAGGGTTTCTCCGTCCTGCTGAACGCGATGGAGGG
CATCGAGGTGGTCGGGGAGGCCGTGGACGGCCGCCAGGCCATCGCCCAGGTGGCGGCTCTGCGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGGTTGGAGGCGACCCGGCGGATCGTGGCCGCCGACACGGACGCGAAGGTGCTG
GTCCTGACGACCTTCGACCTCGACGAGTACGTGTACCAGGCCCTGCGGGCTGGGGCGTCCGGATTCCTGCTGAAGGACGC
CTCGGCTCGTCAACTGGCCGAGGGAGTAAGGGTGGTGGCGGCCGGCGAGGCGTTGCTGGCACCTTCGGTGACCAAGCGGC
TGATCGTGGAGTTCTCGAAACTCGCGGAGTCACCCCGCCTCTCGGATCCGGCGGGGGTCGCGCAGCTGACGGAGCGGGAG
ACGGAGGTCCTGATACTGATCGCGCAGGGACTGACGAATGCCGAGATCGCGGACCGGCTGGTCGTCGCGGAGTCCACGAT
CAAGACCCATGTGAGCCGGATCCTGGTGAAGTTGGGCCTGCGGGACCGGACGCAGGCGGCGGTGTTCGCGTACGAGACAC
GACTGGTCACGCCGGCGTAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.444

98.63

0.438
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

100

0.425