Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA84_RS17570 Genome accession   NZ_CP107845
Coordinates   3813449..3814138 (+) Length   229 a.a.
NCBI ID   WP_266970860.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00513     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3808449..3819138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA84_RS17545 (OHA84_17510) - 3808593..3808982 (+) 390 WP_053676948.1 nuclear transport factor 2 family protein -
  OHA84_RS17550 (OHA84_17515) - 3809166..3809681 (-) 516 WP_371591403.1 HIT family protein -
  OHA84_RS17555 (OHA84_17520) - 3809920..3810921 (+) 1002 WP_266970866.1 alpha/beta hydrolase -
  OHA84_RS17560 (OHA84_17525) - 3810914..3812116 (+) 1203 WP_266970864.1 acyltransferase -
  OHA84_RS17565 (OHA84_17530) - 3812235..3813449 (+) 1215 WP_266970862.1 sensor histidine kinase -
  OHA84_RS17570 (OHA84_17535) vraR 3813449..3814138 (+) 690 WP_266970860.1 response regulator transcription factor Regulator
  OHA84_RS17575 (OHA84_17540) - 3814275..3815555 (+) 1281 WP_266948309.1 histidine kinase -
  OHA84_RS17580 (OHA84_17545) vraR 3815552..3816211 (+) 660 WP_053676953.1 response regulator transcription factor Regulator
  OHA84_RS17585 (OHA84_17550) - 3816551..3817753 (+) 1203 WP_266948312.1 cytochrome P450 -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24425.24 Da        Isoelectric Point: 4.6064

>NTDB_id=646908 OHA84_RS17570 WP_266970860.1 3813449..3814138(+) (vraR) [Streptomyces sp. NBC_00513]
MTVLNNPIGPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGAEAVAKVSELGPDVLLMDIRMPGMGGIEATSIITG
DPAATVKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRMGAPRGPSRAR
IDELTERETEVLSLIAQGLSNAEIAGHLVLAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLIRPTGY

Nucleotide


Download         Length: 690 bp        

>NTDB_id=646908 OHA84_RS17570 WP_266970860.1 3813449..3814138(+) (vraR) [Streptomyces sp. NBC_00513]
ATGACCGTCCTGAACAACCCGATCGGACCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGCCAAGGCTTCAC
GGTGCTCCTCAACGCCCAGCCCGACATAGAGGTCGTGGGGCAGGCGGTGGACGGGGCGGAGGCGGTGGCGAAGGTCTCCG
AGCTGGGCCCGGACGTGCTGCTGATGGACATCCGGATGCCCGGCATGGGTGGCATCGAGGCCACCTCGATCATCACCGGT
GATCCGGCCGCCACGGTGAAGGTGCTGGTGCTGACCACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGCGCCGG
GGCCTCCGGATTCCTCCTCAAGGACGCGTCCGCCGATCAGCTCGCGGAGGCCGTACGGGTCGTGGCGGCAGGCGAGGCCC
TGCTGTCGCCGAACATCACGAAGCGGCTGATCACGGAGTTCTCGCGGATGGGCGCACCGCGGGGCCCCTCGCGGGCGCGG
ATCGACGAGCTGACGGAGCGGGAGACGGAGGTGCTGTCGTTGATCGCGCAGGGCCTGTCCAACGCGGAGATCGCGGGGCA
CCTGGTGCTGGCCGAGCAGACGGTGAAGACGCACGTGAGCCGGATCCTGGTGAAGCTGGGCCTGCGGGACCGGACCCAGG
CGGCGGTGTTCGCGTACGAGACGGGCCTGATCCGCCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(163-218)

Response regulator receiver domain (Response_reg)

(13-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

47.222

94.323

0.445
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

98.253

0.406