Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHN73_RS21385 Genome accession   NZ_CP107839
Coordinates   4585430..4586110 (-) Length   226 a.a.
NCBI ID   WP_266518613.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00519     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4580430..4591110
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHN73_RS21365 (OHN73_21255) - 4580881..4581519 (+) 639 WP_266518622.1 GPP34 family phosphoprotein -
  OHN73_RS21370 (OHN73_21260) - 4581604..4583208 (+) 1605 WP_266518620.1 carboxylesterase/lipase family protein -
  OHN73_RS21375 (OHN73_21265) vraR 4583266..4583931 (-) 666 WP_266518618.1 response regulator transcription factor Regulator
  OHN73_RS21380 (OHN73_21270) - 4583928..4585295 (-) 1368 WP_266518616.1 sensor histidine kinase -
  OHN73_RS21385 (OHN73_21275) vraR 4585430..4586110 (-) 681 WP_266518613.1 response regulator transcription factor Regulator
  OHN73_RS21390 (OHN73_21280) - 4586107..4587615 (-) 1509 WP_406321109.1 sensor histidine kinase -
  OHN73_RS21395 (OHN73_21285) - 4587626..4588864 (-) 1239 WP_406321110.1 acyltransferase -
  OHN73_RS21400 (OHN73_21290) - 4589058..4590095 (-) 1038 WP_266518611.1 alpha/beta hydrolase -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24549.24 Da        Isoelectric Point: 4.8664

>NTDB_id=646830 OHN73_RS21385 WP_266518613.1 4585430..4586110(-) (vraR) [Streptomyces sp. NBC_00519]
MTSSRSPIRVLIADDQQMVRQGFTVLLNTKADIEVVGQAVDGLDAVAKVAEFVPDVVLMDIRMPELDGIEATRRITGATP
HIKVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIDQFSRLDGRPRTPLKERVGD
LTERETEVLALIAEGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646830 OHN73_RS21385 WP_266518613.1 4585430..4586110(-) (vraR) [Streptomyces sp. NBC_00519]
ATGACGAGCAGCCGTAGCCCCATCCGCGTACTGATCGCCGACGACCAGCAGATGGTCCGGCAGGGCTTCACCGTGCTGCT
CAACACCAAGGCTGACATCGAGGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCCGTGGCCAAGGTCGCCGAGTTCGTCC
CGGACGTCGTCCTGATGGACATCCGGATGCCCGAGCTCGACGGTATCGAGGCCACCCGCCGCATCACCGGGGCGACGCCC
CACATCAAGGTGCTGGTGCTCACCACCTTCGACCTCGACGAGTACGTGTACGAAGCGCTGCGCGCGGGAGCGTCCGGGTT
CCTCCTGAAGGACGCGTCGGCGGACCAGCTGGCCGAGGCGGTGCGGGTGGTGGCGGCCGGCGACGCGCTGCTGGCACCGG
GCATCACCCGACGGCTGATCGACCAGTTCTCCCGCCTGGACGGCCGGCCTCGCACCCCCCTCAAGGAGCGGGTCGGCGAT
CTGACCGAGCGCGAGACGGAGGTCCTCGCACTGATCGCGGAGGGGTTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGT
CGCCGAGCAGACGGTGAAGACCCATGTGGGCCGGATCCTGGTGAAGCTGGGCCTCAGGGACCGCACGCAGGCGGCGGTGT
TCGCGTACGAGTCGGGGCTGGTACGGCCGTCCGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(161-215)

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.116

95.133

0.429
  degU Bacillus subtilis subsp. subtilis str. 168

41.778

99.558

0.416