Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L0B17_RS04130 Genome accession   NZ_CP090974
Coordinates   920662..921360 (+) Length   232 a.a.
NCBI ID   WP_235087788.1    Uniprot ID   -
Organism   Shewanella sp. OMA3-2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 915662..926360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B17_RS04120 (L0B17_04120) uvrA 916061..918950 (-) 2890 Protein_793 excinuclease ABC subunit UvrA -
  L0B17_RS04125 (L0B17_04125) - 919240..920607 (+) 1368 WP_235087786.1 MFS transporter -
  L0B17_RS04130 (L0B17_04130) ssb 920662..921360 (+) 699 WP_235087788.1 single-stranded DNA-binding protein Machinery gene
  L0B17_RS04135 (L0B17_04135) - 921488..922498 (+) 1011 WP_235087790.1 glycosyltransferase family 9 protein -
  L0B17_RS04140 (L0B17_04140) rfaD 922556..923509 (+) 954 WP_235087791.1 ADP-glyceromanno-heptose 6-epimerase -
  L0B17_RS04145 (L0B17_04145) - 923547..924392 (+) 846 WP_235087793.1 glycosyltransferase -
  L0B17_RS04150 (L0B17_04150) - 924509..925285 (+) 777 WP_235087795.1 glycosyltransferase family 25 protein -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 25579.91 Da        Isoelectric Point: 5.8070

>NTDB_id=646813 L0B17_RS04130 WP_235087788.1 920662..921360(+) (ssb) [Shewanella sp. OMA3-2]
MASRGVNKVILVGNLGKDPEVRYMPNGNAVANFTVATSESWKDQQGQLQERTEWHNIVMYRRLAEVAGEYLKKGSKVYLE
GKLQTSKWQDQTTGQDRYKTEINAMEMQMLDSRNSGAGQDNTQYDQAPQQRAPQAPRPAAQPQYNQAGANQGSSQDSHQS
SAGGYQQAPAQGGYTQQNKPAPQQAAYAPKPQAPQGNYQPQQNAAPAQRPAPQPAQNFTPDLDEGWDDDIPF

Nucleotide


Download         Length: 699 bp        

>NTDB_id=646813 L0B17_RS04130 WP_235087788.1 920662..921360(+) (ssb) [Shewanella sp. OMA3-2]
ATGGCCAGTCGTGGTGTGAATAAAGTCATTTTAGTGGGTAACTTAGGTAAAGATCCTGAGGTACGTTACATGCCAAATGG
TAATGCCGTTGCCAATTTTACTGTCGCGACAAGTGAGTCGTGGAAAGACCAACAAGGTCAACTACAAGAACGAACGGAAT
GGCATAACATTGTTATGTACCGTCGTTTAGCTGAAGTGGCTGGCGAGTACCTTAAAAAGGGCTCTAAGGTTTACCTTGAA
GGAAAATTGCAAACCAGTAAGTGGCAAGACCAAACTACCGGTCAAGACCGTTATAAAACTGAAATCAATGCGATGGAAAT
GCAGATGCTTGATAGCCGCAATAGCGGTGCAGGCCAAGATAATACTCAATACGATCAAGCGCCACAGCAACGTGCTCCAC
AAGCACCACGCCCAGCGGCTCAACCTCAGTACAATCAAGCGGGTGCTAACCAAGGTTCAAGCCAGGATAGTCATCAAAGT
TCAGCTGGTGGTTACCAACAAGCGCCTGCTCAAGGTGGCTATACTCAGCAAAATAAGCCAGCACCACAGCAAGCTGCTTA
TGCGCCTAAGCCACAAGCACCGCAAGGTAATTATCAGCCTCAGCAAAATGCAGCACCGGCACAGCGCCCTGCACCGCAAC
CTGCACAAAACTTTACTCCTGATTTGGATGAAGGTTGGGATGATGATATTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

48.069

100

0.483
  ssb Vibrio cholerae strain A1552

46.639

100

0.478
  ssb Neisseria gonorrhoeae MS11

44.053

97.845

0.431