Detailed information NTG0646628

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: L1B16_RS16185
• Genome accession: NZ_CP090954
• Coordinates: 3766425..3767819 (+)
• Length: 464 a.a.
• NCBI ID: WP_051634076.1
• Uniprot ID: A0AAP4NHR5
• Organism: Xanthomonas arboricola pv. pruni strain Xcp1
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3761425..3772819

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
L1B16_RS16170 (L1B16_04815)	sucD	3762318..3763193 (-)	876	WP_011038208.1	succinate--CoA ligase subunit alpha	-
L1B16_RS16175 (L1B16_04820)	sucC	3763218..3764387 (-)	1170	WP_016901264.1	ADP-forming succinate--CoA ligase subunit beta	-
L1B16_RS16180 (L1B16_04825)	-	3764619..3766232 (+)	1614	WP_039512337.1	HAMP domain-containing sensor histidine kinase	-
L1B16_RS16185 (L1B16_04830)	pilR	3766425..3767819 (+)	1395	WP_051634076.1	sigma-54 dependent transcriptional regulator	Regulator
L1B16_RS16190 (L1B16_04835)	pilB	3768055..3769788 (-)	1734	WP_039512338.1	type IV-A pilus assembly ATPase PilB	Machinery gene
L1B16_RS16195 (L1B16_04840)	-	3769973..3770377 (-)	405	WP_043088084.1	pilin	-
L1B16_RS16200 (L1B16_04845)	pilC	3770755..3772014 (+)	1260	WP_043088082.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 464 a.a.
• Molecular weight: 50118.51 Da
• Isoelectric Point: 6.5112

>NTDB_id=646628 L1B16_RS16185 WP_051634076.1 3766425..3767819(+) (pilR) [Xanthomonas arboricola pv. pruni strain Xcp1]
MNEPKSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLANNPYDLCLTDMRLPDGNGIELVTEIAKHYPQTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNRDRPAPPAPPPEQASRLLGDSGAMEGLRATIGKVAR
SQAPVYIVGESGVGKELVARTIHEQGARAAGPFVPVNCGAIPAELMESEFFGHKKGSFTGAHADKPGLFQAAHGGTLFLD
EVAELPLQMQVKLLRAIQEKSVRPVGASSESLVDVRILSATHKNLGDLVSDGRFRHDLYYRINVIELRVPPLRERGGDLP
QLAAAIIARLAHSHGRPIPLLTQSALDALDQYGFPGNVRELENILERALALAEDDQISATDLRLPAHGGHRLAATPGSAA
VEPREAVVDIDPASAALPSYIEQLERAAIQKALEENRWNKTKTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1395 bp

>NTDB_id=646628 L1B16_RS16185 WP_051634076.1 3766425..3767819(+) (pilR) [Xanthomonas arboricola pv. pruni strain Xcp1]
ATGAACGAACCGAAAAGTGCCCTGGTTGTCGATGACGAGCGTGACATTCGCGAACTGCTTGTTCTCACCCTGGGCCGGAT
GGGCCTGCGCATCAGCACCGCCGCCAACCTGGCCGAAGCGCGCGAGCTGCTGGCCAACAATCCCTACGACCTGTGCCTGA
CCGACATGCGGTTGCCCGACGGCAACGGCATCGAGCTGGTCACCGAAATCGCCAAGCACTATCCGCAGACCCCGGTGGCG
ATGATCACCGCGTTCGGCAGCATGGACCTGGCGGTGGAAGCCTTGAAGGCCGGCGCCTTCGACTTCGTCAGCAAGCCGGT
GGACATCAGCGTGCTGCGCGGCCTGGTCAAGCACGCGCTGGAATTGAACAACCGCGACCGCCCCGCCCCGCCCGCGCCGC
CGCCGGAACAGGCCAGCCGCCTGCTCGGCGACTCCGGCGCGATGGAAGGCCTGCGCGCCACCATCGGCAAGGTCGCGCGC
AGCCAGGCGCCGGTCTACATCGTCGGCGAATCGGGCGTGGGCAAGGAGCTGGTCGCCCGCACCATCCACGAGCAAGGCGC
ACGCGCGGCCGGTCCATTTGTGCCGGTCAACTGCGGCGCCATCCCCGCCGAACTGATGGAAAGCGAATTCTTCGGCCACA
AGAAGGGCAGTTTCACCGGCGCGCATGCCGACAAGCCCGGCCTGTTCCAGGCCGCGCATGGCGGCACGCTGTTTCTGGAC
GAGGTGGCCGAATTGCCGCTGCAGATGCAGGTCAAGCTGCTGCGCGCGATCCAGGAAAAATCGGTGCGCCCGGTGGGCGC
TTCCAGCGAGTCGCTGGTGGACGTGCGCATTCTCTCGGCCACCCACAAAAACCTGGGCGACCTGGTCTCCGACGGCCGTT
TCCGCCACGACCTGTACTACCGCATCAACGTCATCGAACTGCGCGTGCCGCCGCTGCGCGAACGCGGCGGCGACCTGCCG
CAACTGGCCGCGGCCATCATCGCGCGCCTGGCGCATAGCCACGGCCGGCCGATTCCGCTGCTGACCCAGTCCGCGCTCGA
CGCGCTGGACCAGTACGGCTTCCCGGGCAATGTGCGCGAGCTGGAAAATATCCTCGAACGCGCCCTGGCCCTGGCCGAAG
ACGACCAGATCAGCGCCACCGACCTGCGCCTGCCCGCCCACGGCGGCCATCGCCTGGCCGCCACACCCGGCAGCGCCGCC
GTCGAACCCCGCGAAGCAGTGGTCGACATCGACCCCGCCTCGGCCGCCCTGCCTTCCTACATCGAGCAACTGGAACGCGC
CGCGATCCAGAAGGCGCTGGAAGAAAACCGCTGGAACAAGACCAAGACCGCCGCGCAGCTGGGCATCACGTTTCGGGCGT
TGCGTTACAAGTTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (421-461)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (142-307)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.261	99.138	0.627
pilR	Acinetobacter baumannii strain A118	48.922	100	0.489