Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS33_RS32590 Genome accession   NZ_CP107819
Coordinates   7624343..7625023 (-) Length   226 a.a.
NCBI ID   WP_330334005.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 7619343..7630023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS32560 (OHS33_32555) - 7620242..7621021 (+) 780 WP_330334000.1 NAD(P)H-dependent oxidoreductase -
  OHS33_RS32565 (OHS33_32560) - 7621054..7621809 (-) 756 WP_330334001.1 DeoR/GlpR family DNA-binding transcription regulator -
  OHS33_RS32570 (OHS33_32565) - 7621869..7622537 (+) 669 WP_330334002.1 NUDIX domain-containing protein -
  OHS33_RS32575 (OHS33_32570) - 7622604..7622843 (-) 240 WP_330334003.1 chaplin -
  OHS33_RS32580 (OHS33_32575) - 7623023..7623361 (-) 339 Protein_6422 serine hydrolase -
  OHS33_RS32585 (OHS33_32580) - 7623395..7624186 (-) 792 WP_330334004.1 alpha/beta hydrolase -
  OHS33_RS32590 (OHS33_32585) vraR 7624343..7625023 (-) 681 WP_330334005.1 response regulator transcription factor Regulator
  OHS33_RS32595 (OHS33_32590) - 7625020..7626330 (-) 1311 WP_330334006.1 histidine kinase -
  OHS33_RS32600 (OHS33_32595) - 7626517..7627485 (+) 969 WP_330334007.1 AEC family transporter -
  OHS33_RS32605 (OHS33_32600) - 7627482..7628069 (+) 588 WP_330334008.1 hypothetical protein -
  OHS33_RS32610 (OHS33_32605) - 7628076..7629116 (-) 1041 WP_330334009.1 phosphotransferase -
  OHS33_RS32615 (OHS33_32610) - 7629254..7629622 (+) 369 WP_330334010.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24189.06 Da        Isoelectric Point: 6.1190

>NTDB_id=646629 OHS33_RS32590 WP_330334005.1 7624343..7625023(-) (vraR) [Streptomyces sp. NBC_00536]
MTIRVIIVDDQAMVRAGFAALLSAQADIDVVGEAPDGRRGIEVARTTHPDVVLMDVRMPEMDGLTAARALLGPAPGVVHR
PKVLMLTTFDIDDYVYEALRAGASGFLLKDAPPADLIAAVRVVASGEALLAPSVTRRLIADFVQQRPAPRKDPALRLNGL
TPRETEVLELIARGLSNQEIAGHLVLAEQTVKTHIGRVLGKLDLRDRAQAVIFAYEAGLVRPGDGA

Nucleotide


Download         Length: 681 bp        

>NTDB_id=646629 OHS33_RS32590 WP_330334005.1 7624343..7625023(-) (vraR) [Streptomyces sp. NBC_00536]
TTGACCATCCGCGTGATCATCGTCGACGACCAGGCCATGGTGCGGGCGGGGTTCGCCGCGCTGCTGTCGGCGCAGGCCGA
CATCGACGTCGTGGGCGAGGCCCCCGACGGCCGCCGCGGCATCGAGGTGGCGCGCACCACGCACCCCGACGTGGTGCTGA
TGGACGTGCGGATGCCGGAAATGGACGGGCTCACGGCGGCCCGCGCCCTGCTCGGGCCGGCGCCCGGGGTGGTGCACCGG
CCGAAGGTGCTGATGCTGACCACCTTCGACATCGACGACTACGTGTACGAGGCGCTGCGCGCGGGCGCCTCCGGGTTCCT
GCTGAAGGACGCGCCGCCCGCCGACCTGATCGCGGCGGTCCGCGTGGTCGCCTCGGGCGAGGCACTGCTGGCACCGTCGG
TGACCCGGCGGCTGATCGCGGACTTCGTGCAGCAGCGGCCCGCGCCGCGCAAGGATCCGGCGCTGCGGCTCAACGGGCTG
ACCCCGCGGGAGACCGAGGTGCTGGAGCTGATCGCGCGCGGGCTCTCGAACCAGGAGATCGCCGGACACCTCGTCCTGGC
CGAGCAGACGGTCAAGACGCACATCGGCCGGGTCCTGGGCAAGCTGGACCTGCGGGACCGGGCGCAGGCCGTCATCTTCG
CCTACGAGGCCGGGCTGGTGCGCCCGGGCGACGGCGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-214)

Response regulator receiver domain (Response_reg)

(5-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

42.534

97.788

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

37.445

100

0.376