Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | LZT96_RS06270 | Genome accession | NZ_CP090941 |
| Coordinates | 1294699..1295673 (+) | Length | 324 a.a. |
| NCBI ID | WP_002497933.1 | Uniprot ID | - |
| Organism | Staphylococcus epidermidis strain HAF242 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1289699..1300673
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LZT96_RS06235 (LZT96_06235) | rpmG | 1290180..1290329 (+) | 150 | WP_001830957.1 | 50S ribosomal protein L33 | - |
| LZT96_RS06240 (LZT96_06240) | - | 1290511..1291062 (+) | 552 | WP_002497935.1 | 5-formyltetrahydrofolate cyclo-ligase | - |
| LZT96_RS06245 (LZT96_06245) | - | 1291063..1292523 (+) | 1461 | WP_002497934.1 | rhomboid family intramembrane serine protease | - |
| LZT96_RS06250 (LZT96_06250) | - | 1292507..1292707 (+) | 201 | WP_002446537.1 | YqgQ family protein | - |
| LZT96_RS06255 (LZT96_06255) | - | 1292707..1293693 (+) | 987 | WP_002473556.1 | ROK family glucokinase | - |
| LZT96_RS06260 (LZT96_06260) | - | 1293693..1294019 (+) | 327 | WP_001831234.1 | MTH1187 family thiamine-binding protein | - |
| LZT96_RS06265 (LZT96_06265) | - | 1294019..1294642 (+) | 624 | WP_002446535.1 | MBL fold metallo-hydrolase | - |
| LZT96_RS06270 (LZT96_06270) | comGA | 1294699..1295673 (+) | 975 | WP_002497933.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| LZT96_RS06275 (LZT96_06275) | comGB | 1295645..1296712 (+) | 1068 | WP_002497932.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| LZT96_RS06280 (LZT96_06280) | comGC | 1296730..1297047 (+) | 318 | WP_001831271.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| LZT96_RS06285 (LZT96_06285) | comGD | 1297037..1297474 (+) | 438 | WP_002497931.1 | competence type IV pilus minor pilin ComGD | - |
| LZT96_RS06290 (LZT96_06290) | - | 1297461..1297754 (+) | 294 | WP_001831116.1 | hypothetical protein | - |
| LZT96_RS06295 (LZT96_06295) | comGF | 1297678..1298169 (+) | 492 | WP_002497930.1 | competence type IV pilus minor pilin ComGF | - |
| LZT96_RS06300 (LZT96_06300) | - | 1298334..1298846 (+) | 513 | WP_002497929.1 | shikimate kinase | - |
| LZT96_RS06305 (LZT96_06305) | gcvT | 1299064..1300155 (+) | 1092 | WP_002497928.1 | glycine cleavage system aminomethyltransferase GcvT | - |
Sequence
Protein
Download Length: 324 a.a. Molecular weight: 37282.35 Da Isoelectric Point: 8.8166
>NTDB_id=646583 LZT96_RS06270 WP_002497933.1 1294699..1295673(+) (comGA) [Staphylococcus epidermidis strain HAF242]
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAYQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAVLRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNSRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
MKILFEQIINHAIKQEASDIHFIPCEEHTIIKLRIKDELTIYDRLSFPIYKKLLIYMKFQSGLDVSTQHRAQSGRYSYKM
KHLYYLRISTLPLSLGNESCVIRIVPQYFQTTRESYEFKDFKHFMKKKQGLLLFSGPTGSGKSTLMYQMVLYAYQKLNLN
VISVEDPVEQILNGITQISVNEKAGINYESSFKAVLRCDPDVILIGEIRDSTVAKYVIQASLSGHLVLSTMHANDCKGAL
LRLLEMGISVQELCQAINLISNQRLITTTTNSRQLVSELMFQSQINYFFEHNHSLPKNFTKLSTHLNKMSKEGVICEEVV
DKYI
Nucleotide
Download Length: 975 bp
>NTDB_id=646583 LZT96_RS06270 WP_002497933.1 1294699..1295673(+) (comGA) [Staphylococcus epidermidis strain HAF242]
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCATATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATAACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCGTTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTCTCGTCAACTAGTATCAGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
TTGAAAATTTTATTTGAACAGATTATCAATCATGCAATTAAGCAAGAAGCAAGTGACATACACTTTATACCATGTGAGGA
ACACACTATAATTAAGCTAAGAATTAAAGATGAGCTCACAATATATGATAGACTTTCATTTCCAATTTATAAAAAATTAC
TTATATACATGAAGTTTCAATCTGGCTTAGATGTATCAACACAGCATAGAGCACAAAGTGGTAGATATAGTTATAAGATG
AAGCATTTATATTATTTAAGAATCTCTACATTACCTTTATCATTAGGCAATGAAAGTTGTGTAATTCGTATAGTACCTCA
ATACTTCCAAACTACACGAGAATCATATGAATTTAAAGATTTTAAACACTTTATGAAAAAGAAACAAGGTCTACTTTTGT
TTAGTGGACCAACTGGCTCTGGCAAAAGTACTTTAATGTACCAAATGGTCCTTTATGCATATCAAAAATTGAATTTAAAT
GTAATATCAGTTGAAGATCCAGTTGAGCAAATACTTAATGGAATAACACAAATATCAGTCAATGAAAAGGCAGGTATAAA
TTATGAAAGCTCTTTCAAAGCCGTTTTAAGGTGTGATCCAGATGTAATTTTAATTGGTGAAATCAGAGATTCTACCGTAG
CTAAATACGTGATTCAAGCCAGTTTAAGCGGGCATTTAGTTTTGTCGACAATGCACGCGAATGATTGCAAGGGAGCATTA
TTACGATTATTAGAAATGGGTATTTCTGTCCAAGAGTTGTGCCAGGCAATCAATTTAATTTCTAATCAAAGATTAATCAC
TACTACTACAAATTCTCGTCAACTAGTATCAGAATTAATGTTTCAAAGCCAAATAAATTATTTTTTTGAACATAATCATT
CTTTACCTAAAAATTTCACAAAATTATCTACACATTTAAACAAAATGTCTAAAGAAGGTGTTATATGTGAAGAAGTTGTC
GATAAATACATTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Staphylococcus aureus MW2 |
69.753 |
100 |
0.698 |
| comGA | Staphylococcus aureus N315 |
69.753 |
100 |
0.698 |