Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   LZT96_RS06275 Genome accession   NZ_CP090941
Coordinates   1295645..1296712 (+) Length   355 a.a.
NCBI ID   WP_002497932.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain HAF242     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1290645..1301712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZT96_RS06245 (LZT96_06245) - 1291063..1292523 (+) 1461 WP_002497934.1 rhomboid family intramembrane serine protease -
  LZT96_RS06250 (LZT96_06250) - 1292507..1292707 (+) 201 WP_002446537.1 YqgQ family protein -
  LZT96_RS06255 (LZT96_06255) - 1292707..1293693 (+) 987 WP_002473556.1 ROK family glucokinase -
  LZT96_RS06260 (LZT96_06260) - 1293693..1294019 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  LZT96_RS06265 (LZT96_06265) - 1294019..1294642 (+) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  LZT96_RS06270 (LZT96_06270) comGA 1294699..1295673 (+) 975 WP_002497933.1 competence type IV pilus ATPase ComGA Machinery gene
  LZT96_RS06275 (LZT96_06275) comGB 1295645..1296712 (+) 1068 WP_002497932.1 competence type IV pilus assembly protein ComGB Machinery gene
  LZT96_RS06280 (LZT96_06280) comGC 1296730..1297047 (+) 318 WP_001831271.1 competence type IV pilus major pilin ComGC Machinery gene
  LZT96_RS06285 (LZT96_06285) comGD 1297037..1297474 (+) 438 WP_002497931.1 competence type IV pilus minor pilin ComGD -
  LZT96_RS06290 (LZT96_06290) - 1297461..1297754 (+) 294 WP_001831116.1 hypothetical protein -
  LZT96_RS06295 (LZT96_06295) comGF 1297678..1298169 (+) 492 WP_002497930.1 competence type IV pilus minor pilin ComGF -
  LZT96_RS06300 (LZT96_06300) - 1298334..1298846 (+) 513 WP_002497929.1 shikimate kinase -
  LZT96_RS06305 (LZT96_06305) gcvT 1299064..1300155 (+) 1092 WP_002497928.1 glycine cleavage system aminomethyltransferase GcvT -
  LZT96_RS06310 (LZT96_06310) gcvPA 1300175..1301521 (+) 1347 WP_002473606.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42322.54 Da        Isoelectric Point: 10.1330

>NTDB_id=646584 LZT96_RS06275 WP_002497932.1 1295645..1296712(+) (comGB) [Staphylococcus epidermidis strain HAF242]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLQQLLSHGFTLYQSFKFLNSYFKYKERTINKKIIQHLQNGATCYDILKIIGY
PELVLLQIKFAENYGNIEEALVDTVQYMKRNLKAKKRLIKTLQYPAALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITRLPKLTFIFIFISGIAFFITYKFYYYLPIEKKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVHIYRNEQDNDFLKFLGDYLFKEANKGLSLPVILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=646584 LZT96_RS06275 WP_002497932.1 1295645..1296712(+) (comGB) [Staphylococcus epidermidis strain HAF242]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTACTACA
GAGATTACAACAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATAAAAAGATTATCCAACATCTACAAAACGGTGCTACATGTTATGATATTTTAAAAATAATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGAGGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATCTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGCTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCGTCTTCCCAAACTAACTTTCATTTTTATCTTTATTAGTGGTATAGCATT
TTTTATCACTTATAAATTCTACTATTATCTACCAATTGAGAAAAAGTTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAACTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCATATATATCGTAATGAGCAAGATAACGATTTTCTTAAATTTCTGGGTGATTATCTTTTTAAAGAAGCTAATAA
AGGGCTTTCATTACCTGTTATATTAATGAATTTAAAATGTTTTCAAAATGATTTGATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGCTATTACAGCAATTTGAAGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATATTTAGTTATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

49.719

100

0.499
  comGB Staphylococcus aureus N315

49.719

100

0.499