Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS33_RS11355 Genome accession   NZ_CP107819
Coordinates   2612105..2614036 (+) Length   643 a.a.
NCBI ID   WP_330330266.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2607105..2619036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS11340 (OHS33_11335) - 2608336..2608635 (+) 300 WP_330330263.1 YtxH domain-containing protein -
  OHS33_RS11345 (OHS33_11340) - 2608718..2610190 (+) 1473 WP_330330264.1 FGGY family carbohydrate kinase -
  OHS33_RS11350 (OHS33_11345) rcrP 2610375..2612108 (+) 1734 WP_330330265.1 ABC transporter ATP-binding protein Regulator
  OHS33_RS11355 (OHS33_11350) rcrQ 2612105..2614036 (+) 1932 WP_330330266.1 ABC transporter ATP-binding protein Regulator
  OHS33_RS11360 (OHS33_11355) - 2614134..2615231 (-) 1098 WP_330335009.1 RNA polymerase sigma factor -
  OHS33_RS11365 (OHS33_11360) - 2615370..2615987 (+) 618 WP_330330267.1 hypothetical protein -
  OHS33_RS11370 (OHS33_11365) - 2615984..2617036 (+) 1053 WP_330330268.1 nucleotidyl transferase AbiEii/AbiGii toxin family protein -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69165.76 Da        Isoelectric Point: 5.2008

>NTDB_id=646572 OHS33_RS11355 WP_330330266.1 2612105..2614036(+) (rcrQ) [Streptomyces sp. NBC_00536]
MSGPGGRMMMGPPTTRSLDFKNSGKRLLAQLTKDRAPLWGMIVAVVGSVACSVVGPKILGRATDLVFAGIVGRNMPRGIT
KEQALEGLRAKGEGGMADMLSGTDFTPGQGIDFGAIGVVALWALAAFVSAGLLMLVATRLANRVMNGTLYRMREELQDKL
SRLPLSYFDRQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPMAVFIAAKIGKK
SQPQFVAQWKVTGTLNAHIEEMYSGHTLVKVFGRQQESAAVFAEQNEALYRASFKAQFVSGIMQPVMFFVSNINYVLVAV
VGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQLASMANLVQSGVASAERVYELLDAEEQEPDAAVQDFPEEVRGAVSLEK
VSFRYEPDKPLIENLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIAIDGVDIAKMSREQLRSGIGMVLQDTW
LFGGTIAENIAYGASSAREVTRAEIEEAARAAHADRFIRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAAGRTSFVIAHRLSTIRDADVILVMEDGSIVEQGTHEALLTAEGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=646572 OHS33_RS11355 WP_330330266.1 2612105..2614036(+) (rcrQ) [Streptomyces sp. NBC_00536]
ATGAGCGGGCCCGGTGGACGGATGATGATGGGACCGCCGACGACGCGGTCCCTGGACTTCAAGAATTCCGGCAAGCGGCT
GCTGGCGCAGCTGACGAAGGACCGTGCCCCGCTCTGGGGCATGATCGTCGCGGTCGTCGGCAGCGTCGCCTGCTCGGTGG
TCGGTCCGAAGATCCTCGGCCGGGCGACCGACCTGGTCTTCGCGGGGATCGTGGGCCGGAACATGCCGCGCGGCATCACC
AAGGAGCAGGCCCTGGAGGGCCTGCGCGCCAAGGGTGAGGGCGGCATGGCCGACATGCTGTCCGGGACGGACTTCACGCC
GGGTCAGGGCATCGACTTCGGCGCCATCGGCGTGGTCGCGCTCTGGGCGCTGGCCGCCTTCGTGTCGGCCGGTCTGCTGA
TGCTGGTGGCGACCCGGCTGGCGAACCGTGTGATGAACGGCACCCTGTACCGGATGCGCGAGGAGCTGCAGGACAAGCTC
TCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCCACGAACGACATCGACAACAT
CGGGCAGACGCTCCAGCAGACGATGGGGCAGCTGCTGAACTCGCTGCTGACGATCGTCGGTGTGCTGGCGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGATGGCGGTCTTCATCGCCGCGAAGATCGGCAAGAAG
TCGCAGCCGCAGTTCGTGGCGCAGTGGAAGGTCACCGGCACGCTCAACGCGCACATCGAGGAGATGTACTCGGGGCACAC
GCTGGTGAAGGTCTTCGGACGCCAGCAGGAGTCCGCGGCGGTCTTCGCCGAGCAGAACGAGGCGCTGTACCGGGCCTCCT
TCAAGGCGCAGTTCGTCAGCGGGATCATGCAGCCGGTGATGTTCTTCGTCTCGAACATCAACTACGTGCTGGTCGCGGTC
GTCGGCGGGCTCCGGGTCGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTC
GATGCCGCTGACGCAGCTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTGGCCTCGGCGGAGCGGGTCTACGAGCTGC
TCGACGCCGAGGAGCAGGAACCGGACGCGGCGGTCCAGGACTTCCCGGAGGAGGTCCGCGGCGCGGTCTCGCTGGAGAAG
GTGTCGTTCCGCTACGAGCCGGACAAGCCGCTGATCGAAAACCTGTCGCTGTCCGTCGAGCCCGGCCAGACGGTCGCGAT
CGTCGGTCCGACGGGTGCGGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCG
CCATCGACGGGGTGGACATCGCGAAGATGAGCCGCGAGCAGCTGCGCTCCGGCATCGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACCATCGCGGAGAACATCGCCTACGGCGCCTCCTCCGCGCGCGAGGTGACGCGCGCCGAGATCGAGGA
GGCCGCGCGCGCCGCGCACGCGGACCGCTTCATCCGCACCCTGCCGGACGGGTACGACACCGTGCTGGACGACGAGGGCG
CGGGCGTCAGCGCGGGCGAGAAGCAGTTGATCACGATCGCCCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTGGAC
GAGGCGACCAGCTCGGTCGACACGCGTACGGAGGTGCTGATCCAGAAGGCGATGGCCCGGCTGGCGGCCGGCCGTACGTC
CTTCGTGATCGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTCATCCTGGTGATGGAGGACGGCTCGATCGTGGAAC
AGGGCACGCACGAGGCGCTGCTGACGGCGGAGGGCGCGTACGCGCGCCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(41-350)

ABC transporter (ABC_tran)

(413-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.545

97.045

0.393