Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS16840 Genome accession   NZ_CP107811
Coordinates   3759000..3759671 (-) Length   223 a.a.
NCBI ID   WP_329196384.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3754000..3764671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS16820 (OG861_16830) - 3754766..3755581 (+) 816 WP_329202304.1 diacylglycerol kinase -
  OG861_RS16825 (OG861_16835) - 3755600..3756802 (-) 1203 WP_329196390.1 cytochrome P450 -
  OG861_RS16830 (OG861_16840) vraR 3756895..3757554 (-) 660 WP_329196388.1 response regulator transcription factor Regulator
  OG861_RS16835 (OG861_16845) - 3757551..3758912 (-) 1362 WP_330261763.1 histidine kinase -
  OG861_RS16840 (OG861_16850) vraR 3759000..3759671 (-) 672 WP_329196384.1 response regulator transcription factor Regulator
  OG861_RS16845 (OG861_16855) - 3759668..3760993 (-) 1326 WP_329196382.1 sensor histidine kinase -
  OG861_RS16850 (OG861_16860) - 3761004..3762206 (-) 1203 WP_329196380.1 acyltransferase -
  OG861_RS16855 (OG861_16865) - 3762199..3763173 (-) 975 WP_329196379.1 alpha/beta hydrolase -
  OG861_RS16860 (OG861_16870) - 3763379..3763996 (-) 618 WP_329196378.1 LysE family translocator -
  OG861_RS16865 (OG861_16875) - 3764152..3764541 (-) 390 WP_329196376.1 nuclear transport factor 2 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24003.81 Da        Isoelectric Point: 4.8161

>NTDB_id=646526 OG861_RS16840 WP_329196384.1 3759000..3759671(-) (vraR) [Streptomyces sp. NBC_00539]
MTAPIKVMIADDQMMVRQGFTVLLNAQPDIEVVGQAVDGAEAITKAAELRPDVVLMDIRMPGMGGIEATSVITADRAAAV
KVLVLTTFDLDEYVYEALRAGACGFMLKDASADQLAEAVRVVAAGEALLSPNITKRLITEFSRLGAPRAPSRARIDELTE
RETEVLSLIAQGLSNAEIAQHLVLAEQTVKTHVSRILVKLGLRDRTQAAVFAYETGLIRPTGY

Nucleotide


Download         Length: 672 bp        

>NTDB_id=646526 OG861_RS16840 WP_329196384.1 3759000..3759671(-) (vraR) [Streptomyces sp. NBC_00539]
ATGACCGCCCCGATCAAGGTGATGATCGCCGACGACCAGATGATGGTCCGGCAGGGGTTCACCGTGCTGTTGAACGCCCA
GCCCGACATAGAGGTCGTAGGGCAGGCCGTGGACGGCGCCGAGGCGATCACGAAGGCGGCCGAACTCCGCCCCGACGTGG
TGCTGATGGACATCCGCATGCCCGGCATGGGCGGCATCGAGGCGACGTCCGTGATCACCGCCGACCGCGCGGCCGCCGTG
AAGGTGCTCGTCCTGACCACCTTCGACCTGGACGAGTACGTGTACGAGGCCCTGCGCGCCGGGGCCTGCGGCTTCATGCT
CAAGGACGCCTCCGCCGACCAGCTCGCTGAGGCGGTACGGGTGGTGGCGGCCGGTGAGGCTCTGCTCTCGCCGAACATCA
CCAAGCGGCTGATCACCGAGTTCTCCCGGCTGGGGGCGCCCCGTGCACCCTCCCGGGCCCGGATCGACGAGCTGACGGAG
CGGGAGACGGAAGTGCTGTCCCTGATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCCAGCACCTCGTCCTGGCCGAGCA
GACCGTCAAGACGCACGTCAGCCGCATCCTGGTGAAGCTGGGCCTGCGCGATCGGACGCAGGCCGCGGTGTTCGCGTACG
AGACGGGACTGATCCGTCCGACGGGCTACTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

46.759

96.861

0.453
  degU Bacillus subtilis subsp. subtilis str. 168

41.071

100

0.413