Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG861_RS16830 Genome accession   NZ_CP107811
Coordinates   3756895..3757554 (-) Length   219 a.a.
NCBI ID   WP_329196388.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00539     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3751895..3762554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG861_RS16810 (OG861_16820) - 3752181..3753113 (+) 933 WP_329196393.1 hypothetical protein -
  OG861_RS16815 (OG861_16825) - 3753298..3754581 (-) 1284 WP_190186053.1 adenylosuccinate synthase -
  OG861_RS16820 (OG861_16830) - 3754766..3755581 (+) 816 WP_329202304.1 diacylglycerol kinase -
  OG861_RS16825 (OG861_16835) - 3755600..3756802 (-) 1203 WP_329196390.1 cytochrome P450 -
  OG861_RS16830 (OG861_16840) vraR 3756895..3757554 (-) 660 WP_329196388.1 response regulator transcription factor Regulator
  OG861_RS16835 (OG861_16845) - 3757551..3758912 (-) 1362 WP_330261763.1 histidine kinase -
  OG861_RS16840 (OG861_16850) vraR 3759000..3759671 (-) 672 WP_329196384.1 response regulator transcription factor Regulator
  OG861_RS16845 (OG861_16855) - 3759668..3760993 (-) 1326 WP_329196382.1 sensor histidine kinase -
  OG861_RS16850 (OG861_16860) - 3761004..3762206 (-) 1203 WP_329196380.1 acyltransferase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 23628.50 Da        Isoelectric Point: 4.7252

>NTDB_id=646525 OG861_RS16830 WP_329196388.1 3756895..3757554(-) (vraR) [Streptomyces sp. NBC_00539]
MTIKVLIVDDQMMVREGFSVLLNAMEGIEVVGEAVDGRQAIAQVNALRPDVVLMDIRMPEMNGLEATRRIVAADTDAKVL
VLTTFDLDEYVYQALRAGASGFLLKDASARQLAEGVRVVAGGEALLAPSVTKRLICEFSKLAEAPKLADPAGVSQLTERE
TEVLILIAQGLANAEIADRLVVAESTIKTHVSRILVKLGLRDRTQAAVFAYETRLVTPA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=646525 OG861_RS16830 WP_329196388.1 3756895..3757554(-) (vraR) [Streptomyces sp. NBC_00539]
ATGACGATCAAGGTGCTGATCGTCGATGACCAGATGATGGTCCGCGAGGGTTTCTCCGTCCTGCTGAACGCCATGGAAGG
CATCGAGGTGGTCGGCGAAGCGGTGGACGGCCGCCAGGCCATCGCTCAGGTGAACGCCCTGCGGCCGGACGTGGTGCTGA
TGGACATCCGGATGCCGGAGATGAACGGGCTGGAGGCGACGCGGCGGATCGTGGCCGCCGACACCGATGCGAAGGTACTG
GTCCTGACCACCTTCGACCTGGACGAGTACGTGTACCAGGCGCTGCGGGCGGGGGCGTCCGGGTTCCTGCTCAAGGACGC
GTCGGCGAGGCAACTGGCGGAGGGGGTACGGGTGGTGGCGGGCGGTGAGGCGCTGCTGGCCCCCTCGGTGACCAAGCGGC
TGATCTGCGAGTTCTCGAAGCTCGCGGAGGCGCCGAAGCTCGCGGACCCGGCCGGGGTGTCGCAGCTGACGGAGCGGGAG
ACGGAGGTGCTGATCCTGATCGCCCAGGGGCTGGCCAACGCGGAGATAGCCGACCGGCTGGTCGTGGCGGAGTCCACCAT
CAAGACGCATGTGAGCCGGATCCTGGTCAAGTTGGGCCTGCGGGACCGCACACAGGCGGCGGTGTTCGCGTACGAGACGC
GGCTGGTGACCCCTGCGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(5-115)

Bacterial regulatory proteins, luxR family (GerE)

(155-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

44.907

98.63

0.443
  degU Bacillus subtilis subsp. subtilis str. 168

40.889

100

0.42