Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   KB230_RS03920 Genome accession   NZ_CP090922
Coordinates   851939..852655 (-) Length   238 a.a.
NCBI ID   WP_001829999.1    Uniprot ID   C0LF82
Organism   Staphylococcus epidermidis strain 45A6     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 846939..857655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KB230_RS03905 (KB230_03905) - 848219..849172 (+) 954 WP_002470302.1 LacI family DNA-binding transcriptional regulator -
  KB230_RS03910 (KB230_03910) - 849433..850905 (+) 1473 WP_002470315.1 sucrose-6-phosphate hydrolase -
  KB230_RS03915 (KB230_03915) - 850912..851871 (+) 960 WP_234967203.1 carbohydrate kinase family protein -
  KB230_RS03920 (KB230_03920) agrA 851939..852655 (-) 717 WP_001829999.1 quorum-sensing response regulator AgrA Regulator
  KB230_RS03925 (KB230_03925) agrC 852672..853961 (-) 1290 WP_002495230.1 quorum-sensing sensor histidine kinase AgrC -
  KB230_RS03930 (KB230_03930) agrD 853986..854126 (-) 141 WP_002468352.1 cyclic lactone autoinducer peptide AgrD -
  KB230_RS03935 (KB230_03935) - 854132..854695 (-) 564 WP_002468344.1 accessory gene regulator AgrB -
  KB230_RS03940 (KB230_03940) hld 855012..855089 (+) 78 WP_002494082.1 delta-hemolysin -
  KB230_RS03945 (KB230_03945) - 855470..856255 (-) 786 WP_002470342.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27936.97 Da        Isoelectric Point: 5.6250

>NTDB_id=646469 KB230_RS03920 WP_001829999.1 851939..852655(-) (agrA) [Staphylococcus epidermidis strain 45A6]
MKIFVCEDDQRQREHMVSIIKNYIMIEEKPMELALATNDPYEVLEQSKELNDIGCYFLDIQLEADMNGIKLASEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPSELKMRIIDCLETAHTRLKLLSKESNVDTIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDERFFRCHNSFVINRHNIESIDSKERIVYFKNGENCFASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=646469 KB230_RS03920 WP_001829999.1 851939..852655(-) (agrA) [Staphylococcus epidermidis strain 45A6]
ATGAAAATTTTTGTTTGTGAAGATGACCAAAGACAAAGAGAACATATGGTATCAATCATTAAAAACTACATAATGATTGA
AGAAAAGCCAATGGAGTTAGCTTTAGCAACAAATGATCCTTATGAGGTCTTAGAGCAATCAAAAGAACTTAATGACATTG
GTTGTTACTTCCTTGATATTCAATTAGAAGCTGATATGAACGGTATTAAATTAGCCAGTGAAATTCGTAAACATGATCCT
GTTGGTAATATTATATTTGTAACCAGTCACAGTGAGCTGACTTATTTGACGTTTGTTTATAAAGTGGCTGCTATGGATTT
TATTTTTAAAGATGATCCATCTGAATTAAAAATGAGAATCATAGATTGTCTCGAAACAGCACATACACGACTCAAATTAT
TATCAAAAGAAAGTAATGTAGATACGATTGAGTTAAAGCGGGGAAGTAATTCAGTATACGTTCAATATGATGATATTATG
TTTTTTGAATCATCTACGAAATCTCATAGGCTCATTGCACATCTTGATAATCGACAAATTGAATTTTATGGAAATTTAAA
GGAATTAGCACAGCTTGATGAACGTTTCTTTAGATGTCATAACAGTTTTGTGATAAACAGGCATAATATTGAATCTATTG
ACTCAAAAGAACGTATTGTTTACTTTAAGAATGGCGAAAATTGTTTCGCTTCAGTACGTAATGTTAAAAAAATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C0LF82

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.815

100

0.878
  comE/comE2 Streptococcus gordonii strain NCTC7865

35.178

100

0.374
  comE/comE1 Streptococcus gordonii str. Challis substr. CH1

35.178

100

0.374