Detailed information NTG0064646

Bioinformatically predicted

Overview

• Name: comYF
• Type: Machinery gene
• Locus tag: SPYOHK_RS08580
• Genome accession: NZ_AFRY01000001
• Coordinates: 104614..105048 (+)
• Length: 144 a.a.
• NCBI ID: WP_002987783.1
• Uniprot ID: -
• Organism: Streptococcus pyogenes HKU QMH11M0907901
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 99614..110048

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SPYOHK_RS08610 (SPYOHK_00410)	-	101283..101648 (+)	366	WP_002986560.1	DUF1033 family protein	-
SPYOHK_RS08605 (SPYOHK_00415)	comYA	101741..102679 (+)	939	WP_002987773.1	competence type IV pilus ATPase ComGA	Machinery gene
SPYOHK_RS08600 (SPYOHK_00420)	comYB	102615..103649 (+)	1035	WP_223845212.1	competence type IV pilus assembly protein ComGB	Machinery gene
SPYOHK_RS08595 (SPYOHK_00425)	comYC	103651..103977 (+)	327	WP_002986552.1	competence type IV pilus major pilin ComGC	Machinery gene
SPYOHK_RS08590 (SPYOHK_00430)	comGD	103952..104380 (+)	429	WP_002986548.1	competence type IV pilus minor pilin ComGD	-
SPYOHK_RS08585 (SPYOHK_00435)	comGE	104337..104621 (+)	285	WP_002987779.1	competence type IV pilus minor pilin ComGE	-
SPYOHK_RS08580 (SPYOHK_00440)	comYF	104614..105048 (+)	435	WP_002987783.1	competence type IV pilus minor pilin ComGF	Machinery gene
SPYOHK_RS08575 (SPYOHK_00445)	comGG	105032..105358 (+)	327	WP_002987787.1	competence type IV pilus minor pilin ComGG	-
SPYOHK_RS08570 (SPYOHK_00450)	comYH	105456..106409 (+)	954	WP_002987790.1	class I SAM-dependent methyltransferase	Machinery gene
SPYOHK_RS08565 (SPYOHK_00455)	-	106468..107664 (+)	1197	WP_002987791.1	acetate kinase	-
SPYOHK_RS08560 (SPYOHK_00460)	-	107851..108159 (+)	309	WP_002987795.1	hypothetical protein	-
SPYOHK_RS08555 (SPYOHK_00465)	proC	108242..109012 (-)	771	WP_002986527.1	pyrroline-5-carboxylate reductase	-

Sequence

Protein

• Length: 144 a.a.
• Molecular weight: 16585.23 Da
• Isoelectric Point: 10.2064

>NTDB_id=64646 SPYOHK_RS08580 WP_002987783.1 104614..105048(+) (comYF) [Streptococcus pyogenes HKU QMH11M0907901]
MSKQLSNIKAFTLLEALIALLVISGSLLVYQGLTQTLLKRSHYLARHDQDNWLLFSHQLREELSGARFCKVADNKLYVEK
GKKVLAFGQFKSHDFRKSASNGKGYQPMLFGISRSHIHIEQSQICITLKWKSGLERTFYYAFQD

Nucleotide

• Length: 435 bp

>NTDB_id=64646 SPYOHK_RS08580 WP_002987783.1 104614..105048(+) (comYF) [Streptococcus pyogenes HKU QMH11M0907901]
TTGAGTAAACAATTAAGTAACATAAAAGCTTTTACCCTCCTAGAGGCGTTAATAGCCTTACTCGTGATATCAGGGTCTTT
ATTGGTTTATCAAGGTTTGACCCAAACCCTCCTTAAACGTAGCCATTACCTAGCCCGTCATGATCAAGACAATTGGCTCT
TATTTTCTCATCAATTGCGAGAGGAGTTAAGTGGAGCAAGATTTTGCAAAGTAGCTGATAATAAACTATACGTTGAAAAA
GGAAAGAAAGTACTAGCTTTTGGCCAATTTAAAAGTCATGATTTTCGAAAATCAGCTAGTAATGGAAAAGGATATCAACC
CATGTTATTTGGAATATCACGTAGTCATATTCACATAGAGCAGTCACAGATTTGCATTACTTTAAAGTGGAAAAGTGGGT
TAGAAAGGACTTTTTATTATGCCTTTCAAGACTAA

Domains

Predicted by InterproScan.

• Putative Competence protein ComGF (ComGF) (41-135)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYF	Streptococcus mutans UA140	51.079	96.528	0.493
comYF	Streptococcus mutans UA159	50.36	96.528	0.486
comGF	Lactococcus lactis subsp. cremoris KW2	46.715	95.139	0.444
comGF/cglF	Streptococcus mitis NCTC 12261	44.776	93.056	0.417
comGF/cglF	Streptococcus pneumoniae Rx1	43.609	92.361	0.403
comGF/cglF	Streptococcus pneumoniae D39	43.609	92.361	0.403
comGF/cglF	Streptococcus pneumoniae R6	43.609	92.361	0.403
comGF/cglF	Streptococcus pneumoniae TIGR4	43.609	92.361	0.403
comGF/cglF	Streptococcus mitis SK321	42.857	92.361	0.396