Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   L0U97_RS09075 Genome accession   NZ_CP090890
Coordinates   1948726..1949433 (+) Length   235 a.a.
NCBI ID   WP_004915082.1    Uniprot ID   A0A8I0S549
Organism   Acinetobacter junii strain WCO-9     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1943726..1954433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0U97_RS09055 - 1943876..1944298 (-) 423 WP_234856173.1 hypothetical protein -
  L0U97_RS09060 clpB 1944463..1947042 (-) 2580 WP_004953616.1 ATP-dependent chaperone ClpB -
  L0U97_RS09065 - 1947304..1948104 (+) 801 WP_234857312.1 M23 family metallopeptidase -
  L0U97_RS09070 - 1948150..1948578 (-) 429 WP_004953612.1 OsmC family protein -
  L0U97_RS09075 crp 1948726..1949433 (+) 708 WP_004915082.1 cAMP-activated global transcriptional regulator CRP Regulator
  L0U97_RS09080 - 1949637..1950416 (+) 780 WP_004915079.1 M48 family metallopeptidase -
  L0U97_RS09085 - 1950469..1952202 (-) 1734 WP_234856174.1 acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha -
  L0U97_RS09090 - 1952203..1953777 (-) 1575 WP_234856175.1 5-oxoprolinase/urea amidolyase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26613.24 Da        Isoelectric Point: 4.7528

>NTDB_id=646198 L0U97_RS09075 WP_004915082.1 1948726..1949433(+) (crp) [Acinetobacter junii strain WCO-9]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEKNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDTSLEENAFTEEEFDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=646198 L0U97_RS09075 WP_004915082.1 1948726..1949433(+) (crp) [Acinetobacter junii strain WCO-9]
ATGACTTCAAATTTTTCACAGCTTAGCACTGATGCTTTATCACCAGGTCAATTACCTGAATCTGTTAAAGCCTTGCTAAA
ACGTGCTCATATTAACAGATACCCTAAACGCACCACGATTGTTGACGCTGGAACGGAATCAAAATCACTGTATTTAATAT
TAAAAGGTTCGGTGTCAATTATTTTACGTGAAGATGATGAACGTGAGATTGTCGTTGCATACTTAAACCCTGGGGATTTC
TTTGGCGAAATGGGTCTTTTTGAGAAGAACCCACAACGTACTGCGGAAGTAAGAACTCGTGATGTTTGTGAAATCGCCGA
GATTTCATATGACAACTTCCACGAATTAAGCAAACAATATCCTGATTTGAGCTACGCGGTATTTGCTCAATTAGTTCGCC
GCTTAAAAAATACAACACGTAAAGTAACTGACCTTGCATTTATTGATGTATCTGGTCGTATTGCACGTTGTTTAATTGAT
TTATCTTCGCAACCAGAAGCAATGATCTTACCAAATGGTCGTCAAATCCGTATTACTCGCCAAGAGATTGGTCGTATTGT
CGGTTGTTCACGTGAAATGGTTGGACGTGTTCTTAAGACGCTTGAAGATCAAGGCATGATTCAAACTGATGGTAAAGCAA
TTTTAATTTTTGATACGTCATTAGAAGAAAATGCATTTACTGAAGAAGAGTTTGACGACGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

96.17

100

0.962
  crp Vibrio cholerae strain A1552

47.826

88.085

0.421
  crp Haemophilus influenzae Rd KW20

49.223

82.128

0.404