Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   OG852_RS36300 Genome accession   NZ_CP107772
Coordinates   8031253..8033397 (+) Length   714 a.a.
NCBI ID   WP_330350138.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 8026253..8038397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS36275 (OG852_36285) - 8026578..8027579 (-) 1002 WP_330350136.1 PfkB family carbohydrate kinase -
  OG852_RS36280 (OG852_36290) - 8027576..8028484 (-) 909 WP_133910210.1 pseudouridine-5'-phosphate glycosidase -
  OG852_RS36285 (OG852_36295) - 8028556..8029110 (-) 555 WP_133910211.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OG852_RS36290 (OG852_36300) - 8029160..8030032 (-) 873 WP_330350137.1 glycerophosphodiester phosphodiesterase family protein -
  OG852_RS36295 (OG852_36305) - 8030307..8031170 (+) 864 WP_133910213.1 MHYT domain-containing protein -
  OG852_RS36300 (OG852_36310) uvrB 8031253..8033397 (+) 2145 WP_330350138.1 excinuclease ABC subunit UvrB Machinery gene
  OG852_RS36305 (OG852_36315) - 8033558..8034136 (+) 579 WP_133910215.1 TerD family protein -
  OG852_RS36310 (OG852_36320) - 8034190..8036220 (+) 2031 WP_330350139.1 TerD family protein -
  OG852_RS36315 (OG852_36325) - 8036454..8037455 (+) 1002 WP_133910217.1 TerC family protein -
  OG852_RS36320 (OG852_36330) - 8037582..8037896 (+) 315 WP_133910218.1 hypothetical protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80361.17 Da        Isoelectric Point: 4.8641

>NTDB_id=645980 OG852_RS36300 WP_330350138.1 8031253..8033397(+) (uvrB) [Streptomyces sp. NBC_00582]
MRPVSHIERTVAPFEVVSPYQPSGDQPTAIAELAQRIQGGEKDVVLLGATGTGKSATTAWMIEKLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVPLKVGEEIDRDEMLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EIISDDEQLYVFPASHYVAGPERMERAVNDIEKELGERLAELEKQGKLLEAQRLRMRTTYDLEMLRQIGSCSGVENYSMH
FDGRAPGSPPNTLLDYFPDDFLLVIDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQTVYL
SATPGNYELSRGDGVVEQIIRPTGLIDPEVVVKPTEGQIDDLVHEIRKRTEKDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRSGEFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSGTSLIQTIGRAARNVSGQVHMY
ADKITPAMERAIEETNRRREKQVAYNKANGIDPQPLRKKINDIVAQIAREEVDTEQLLGTGYRAKKDGRGTKAPVPSLGD
KAAKGAKTKAAKGKGKETVPTDRPAAQLAEQIEEMTERMRAAAADLQFEVAARIRDEVSEMKKELRQMKEAGLA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=645980 OG852_RS36300 WP_330350138.1 8031253..8033397(+) (uvrB) [Streptomyces sp. NBC_00582]
ATGCGGCCCGTCTCTCACATCGAACGCACGGTGGCGCCCTTCGAGGTCGTCAGTCCCTACCAGCCCAGCGGCGACCAGCC
GACCGCCATCGCCGAGCTCGCCCAGCGCATCCAAGGCGGCGAGAAGGACGTCGTCCTCCTCGGCGCGACCGGCACCGGCA
AGTCCGCCACCACCGCGTGGATGATCGAGAAGCTCCAGCGGCCCACCCTGGTGATGGCCCCGAACAAGACCCTGGCCGCC
CAGCTGGCGAACGAATTCCGCGAACTGCTCCCGAACAACGCGGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTACCGCAGTCGGACACCTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTCGAGCGGCTGCGTCACT
CCGCGACCAACTCGCTGCTCACCCGGCGTGACGTCGTCGTGGTCGCCTCGGTCTCCTGCATCTACGGCCTCGGTACGCCG
CAGGAGTACGTCGACCGGATGGTCCCGCTGAAGGTGGGCGAGGAGATCGACCGCGACGAGATGCTGCGCCGCTTCGTCGA
CATCCAGTACACCCGCAACGACCTGGCGTTCACCCGCGGCACCTTCCGGGTGCGCGGCGACACCATCGAGATCTTCCCGG
TCTACGAGGAGCTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTGTCCACGCTGCACCCCCTCACGGGC
GAGATCATCAGCGACGACGAGCAGCTCTACGTCTTCCCCGCCTCCCACTACGTCGCCGGCCCCGAGCGCATGGAGCGGGC
CGTCAACGACATCGAGAAGGAACTGGGGGAGCGTCTGGCCGAACTGGAGAAGCAGGGCAAGCTCCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACCTCGAGATGCTCCGCCAGATCGGCTCGTGCTCCGGCGTGGAGAACTACTCGATGCAC
TTCGACGGCCGTGCGCCCGGTTCCCCGCCGAACACCCTGCTCGACTACTTCCCCGACGACTTCCTGCTCGTCATCGACGA
GTCGCATGTCACCGTGCCGCAGATCGGCGCGATGTACGAGGGCGACGCCTCTCGCAAGCGGACCCTCGTCGACCACGGCT
TCCGGCTGCCCTCCGCCCTCGACAACCGTCCCCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGGCAGACCGTGTACCTG
TCGGCGACGCCCGGAAACTACGAGCTCTCGCGCGGGGACGGCGTCGTCGAGCAGATCATCCGCCCCACCGGCCTCATCGA
CCCGGAGGTCGTCGTCAAGCCCACGGAGGGCCAGATCGACGACCTGGTGCACGAGATCCGCAAGCGCACCGAGAAGGACG
AGCGCGTCCTGGTCACCACGCTCACCAAGAAGATGGCCGAGGACCTCACGGACTACTTCCTGGAGCTGGGCATCCAGGTG
CGCTATCTGCACAGCGACGTCGACACCCTGCGCCGCATCGAACTGCTGCGTGAGCTGCGCAGCGGCGAGTTCGACGTGCT
GGTCGGCATCAACCTCCTCCGGGAGGGCCTCGACCTCCCGGAGGTGTCGCTGGTGGCGATCCTCGACGCCGACAAGGAGG
GCTTCCTGCGCTCCGGCACCTCGCTGATCCAGACCATCGGCCGCGCGGCGCGCAATGTCTCGGGCCAGGTCCACATGTAC
GCCGACAAGATCACCCCGGCGATGGAGCGGGCCATCGAGGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCCTACAACAA
GGCGAACGGCATCGACCCGCAGCCCCTGCGCAAGAAGATCAACGACATCGTCGCGCAGATCGCCCGCGAGGAGGTCGACA
CCGAGCAGCTCCTCGGGACGGGCTACCGGGCGAAGAAGGACGGACGCGGTACCAAGGCCCCCGTGCCCTCCCTCGGCGAC
AAGGCGGCCAAGGGCGCCAAGACCAAGGCGGCGAAGGGCAAGGGCAAGGAGACGGTCCCCACCGACCGCCCGGCGGCCCA
ACTCGCCGAGCAGATCGAGGAGATGACGGAGCGTATGCGGGCCGCCGCCGCGGACCTGCAGTTCGAGGTCGCCGCCCGGA
TCCGCGACGAGGTCTCCGAGATGAAGAAGGAACTGCGGCAGATGAAGGAGGCGGGTCTGGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

Helicase conserved C-terminal domain (Helicase_C)

(440-551)

UvrB/uvrC motif (UVR)

(670-703)

UvrB interaction domain (UvrB_inter)

(169-257)

Type III restriction enzyme, res subunit (ResIII)

(25-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

57.286

98.039

0.562
  uvrB Streptococcus pneumoniae R6

57.286

98.039

0.562
  uvrB Streptococcus pneumoniae D39

57.286

98.039

0.562