Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG852_RS10080 | Genome accession | NZ_CP107772 |
| Coordinates | 2358466..2361003 (+) | Length | 845 a.a. |
| NCBI ID | WP_133913924.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_00582 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2353466..2366003
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG852_RS10060 (OG852_10085) | - | 2354010..2354852 (-) | 843 | WP_133913920.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| OG852_RS10065 (OG852_10090) | - | 2355054..2357078 (-) | 2025 | WP_330347634.1 | hypothetical protein | - |
| OG852_RS10070 (OG852_10095) | - | 2357233..2357484 (-) | 252 | WP_133913922.1 | helix-turn-helix transcriptional regulator | - |
| OG852_RS10075 (OG852_10100) | map | 2357517..2358287 (+) | 771 | WP_330347635.1 | type I methionyl aminopeptidase | - |
| OG852_RS10080 (OG852_10105) | clpC | 2358466..2361003 (+) | 2538 | WP_133913924.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OG852_RS10085 (OG852_10110) | ggt | 2360998..2362809 (-) | 1812 | WP_330347636.1 | gamma-glutamyltransferase | - |
| OG852_RS10090 (OG852_10115) | - | 2362953..2363699 (+) | 747 | WP_133913926.1 | hypothetical protein | - |
| OG852_RS10095 (OG852_10120) | - | 2364077..2364496 (-) | 420 | WP_133913927.1 | DUF6278 family protein | - |
| OG852_RS10100 (OG852_10125) | - | 2364673..2365452 (-) | 780 | WP_133913929.1 | exodeoxyribonuclease III | - |
Sequence
Protein
Download Length: 845 a.a. Molecular weight: 92384.67 Da Isoelectric Point: 4.9863
>NTDB_id=645925 OG852_RS10080 WP_133913924.1 2358466..2361003(+) (clpC) [Streptomyces sp. NBC_00582]
MTSGYIGPEGDPFGEFLARFFGGPRPGPRQINIGQLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALAAEPTRSLLS
RAGADPDSLATEIDKRSGPVQHPPGETPPPTSLSLTPAAKRALLDAHDLARSRGAGYIGPEHVLSALAANPDSAAGHILN
AARFAPAGLPPETAEAAQAHPERQRPTGTPTLDKYGRDLTELARQGRIDPVIGRDDEIEQTIEVLSRRGKNNPVLIGDAG
VGKTAVVEGLAQRIADGDVPDVLDGRRVVALDLTGVVAGTRYRGDFEERLNTIVGEIRAHSDQLIVFIDELHTVVGAGGG
GEGGSLDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTVPDTIEILRGLRDRYEAHHQVRYTDE
ALVAAVRLSDRYLTDRRLPDKAIDLIDQAGARVRLGARTKGTDVRAMEREAEQLARDKDQAVADEQYELATQLRDRITEL
KQRIADTSGEEEVDEGQHLEVTAEAVAEVVSRQTGIPVASLTQEEKDRLLGLEEHLHERVVGQEEAVRVVSDAVLRSRAG
LSSPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHP
YSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAIGRRGAGIGFGSGGAQADEEARREQI
LRPLREHFRPEFLNRIDEIVVFHQLTDDQLRRITDLLLEKTRELLQAQGIGVEFSAGAVDWLAERGYQPEYGARPLRRTI
QREVDNQLSRLLLDGRVKDGDRVRVEVEDGRLAFRTEPPVPTPEL
MTSGYIGPEGDPFGEFLARFFGGPRPGPRQINIGQLLSQPARELVRGAAQYAAEHGSRDLDTEHLLRAALAAEPTRSLLS
RAGADPDSLATEIDKRSGPVQHPPGETPPPTSLSLTPAAKRALLDAHDLARSRGAGYIGPEHVLSALAANPDSAAGHILN
AARFAPAGLPPETAEAAQAHPERQRPTGTPTLDKYGRDLTELARQGRIDPVIGRDDEIEQTIEVLSRRGKNNPVLIGDAG
VGKTAVVEGLAQRIADGDVPDVLDGRRVVALDLTGVVAGTRYRGDFEERLNTIVGEIRAHSDQLIVFIDELHTVVGAGGG
GEGGSLDAGNILKPALARGELHIVGATTLEEYRRIEKDAALARRFQPILVPEPTVPDTIEILRGLRDRYEAHHQVRYTDE
ALVAAVRLSDRYLTDRRLPDKAIDLIDQAGARVRLGARTKGTDVRAMEREAEQLARDKDQAVADEQYELATQLRDRITEL
KQRIADTSGEEEVDEGQHLEVTAEAVAEVVSRQTGIPVASLTQEEKDRLLGLEEHLHERVVGQEEAVRVVSDAVLRSRAG
LSSPDRPIGSFLFLGPTGVGKTELARALAEALFGSEERMVRLDMSEYQERHTVSRLVGAPPGYVGHEEAGQLTEVVRRHP
YSLLLLDEVEKAHPDVFNILLQVLDDGRLTDSQGRTVDFTNTVIVMTSNLGSEAIGRRGAGIGFGSGGAQADEEARREQI
LRPLREHFRPEFLNRIDEIVVFHQLTDDQLRRITDLLLEKTRELLQAQGIGVEFSAGAVDWLAERGYQPEYGARPLRRTI
QREVDNQLSRLLLDGRVKDGDRVRVEVEDGRLAFRTEPPVPTPEL
Nucleotide
Download Length: 2538 bp
>NTDB_id=645925 OG852_RS10080 WP_133913924.1 2358466..2361003(+) (clpC) [Streptomyces sp. NBC_00582]
ATGACCAGCGGCTACATCGGCCCGGAGGGCGACCCCTTCGGTGAATTCCTGGCCCGCTTCTTCGGCGGCCCCCGCCCCGG
CCCCCGCCAGATCAACATCGGCCAGCTCCTCAGCCAGCCCGCGAGGGAGCTGGTCCGCGGCGCCGCTCAGTACGCCGCCG
AGCACGGCAGCCGGGACCTGGACACCGAGCACCTGCTGCGCGCGGCCCTCGCGGCGGAGCCGACCCGGAGTCTGCTCAGC
CGGGCCGGCGCGGACCCCGACTCGCTGGCGACGGAGATCGACAAGCGGTCGGGGCCGGTGCAGCACCCGCCGGGCGAGAC
GCCCCCGCCGACCTCGCTGTCCCTGACCCCGGCCGCCAAGCGGGCCCTGCTGGACGCGCACGACCTGGCCCGTTCGCGGG
GGGCCGGGTACATCGGCCCGGAGCATGTGCTCAGCGCCCTCGCCGCGAACCCGGACTCCGCGGCCGGGCACATCCTCAAC
GCGGCCCGCTTCGCACCCGCCGGCCTTCCGCCGGAGACCGCCGAGGCCGCGCAGGCGCACCCGGAGCGACAGCGGCCGAC
CGGCACACCCACCCTGGACAAGTACGGCCGTGATCTCACGGAGCTCGCGCGCCAGGGCCGTATCGACCCGGTGATCGGGC
GGGACGACGAGATCGAGCAGACGATCGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCGGTGCTGATCGGTGACGCCGGC
GTCGGCAAGACGGCCGTCGTGGAGGGGCTGGCGCAGCGCATCGCGGACGGGGACGTGCCGGACGTGCTGGACGGCCGCCG
GGTGGTCGCCCTGGACCTGACCGGGGTGGTCGCGGGCACCCGCTACCGGGGCGACTTCGAGGAACGCCTCAACACCATCG
TCGGCGAGATCCGCGCCCACTCCGACCAGCTGATCGTGTTCATCGACGAACTGCACACGGTGGTCGGCGCGGGCGGGGGC
GGCGAGGGCGGCTCGCTGGACGCGGGGAACATCCTCAAGCCGGCGCTGGCGCGCGGCGAACTGCACATCGTGGGCGCGAC
GACGCTGGAGGAGTACCGGCGCATCGAGAAGGACGCGGCGCTCGCCCGCCGCTTCCAGCCGATCCTGGTGCCCGAGCCGA
CCGTCCCGGACACCATCGAGATTTTGCGCGGGCTGCGCGACCGCTACGAGGCGCACCACCAGGTCCGTTACACCGACGAG
GCGCTGGTGGCGGCCGTACGGCTGTCGGACCGCTATCTCACCGACCGTCGGCTGCCCGACAAGGCGATCGACCTGATCGA
CCAGGCGGGGGCGCGGGTGCGCCTCGGTGCCCGGACGAAGGGCACGGACGTCCGGGCCATGGAGCGCGAGGCCGAGCAGC
TCGCCCGCGACAAGGACCAGGCGGTCGCCGACGAGCAGTACGAGCTGGCCACCCAACTGCGCGACCGGATCACCGAGTTG
AAGCAGCGCATCGCGGACACCTCCGGTGAGGAGGAGGTCGACGAGGGCCAGCATCTGGAGGTCACCGCGGAGGCCGTCGC
CGAGGTGGTGTCCCGGCAGACCGGGATCCCCGTCGCGAGCCTCACCCAGGAGGAGAAGGACCGGCTGCTGGGCCTGGAGG
AGCATCTGCACGAGCGGGTCGTGGGCCAGGAGGAGGCCGTACGGGTCGTCTCGGACGCGGTGCTGCGCTCACGGGCGGGC
CTGTCGAGCCCGGACCGGCCGATCGGCAGCTTCCTCTTCCTCGGCCCGACCGGTGTCGGCAAGACGGAGCTCGCGCGGGC
GCTCGCGGAGGCCCTGTTCGGCAGCGAGGAGCGGATGGTCCGGCTCGACATGAGCGAGTACCAGGAGCGGCACACGGTCA
GCAGGCTGGTGGGCGCCCCGCCCGGGTACGTCGGCCACGAGGAGGCCGGGCAGCTCACCGAGGTGGTGCGCAGGCACCCG
TACTCGCTGCTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTGCAGGTCCTCGACGACGG
GCGGCTGACCGACTCCCAGGGCCGCACGGTCGACTTCACCAACACGGTGATCGTGATGACGAGCAACCTGGGGTCGGAGG
CGATCGGCCGGCGCGGGGCGGGCATCGGCTTCGGGTCGGGCGGGGCGCAGGCCGACGAGGAGGCGCGGCGCGAGCAGATC
CTGCGGCCGCTGCGGGAGCACTTCCGCCCGGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCACCAGCTCACCGA
CGACCAACTGCGGCGGATCACCGACCTGTTGCTGGAGAAGACGCGGGAACTGCTGCAGGCGCAGGGCATCGGTGTGGAGT
TCTCGGCCGGGGCGGTGGACTGGCTGGCGGAGCGCGGCTACCAACCCGAGTACGGGGCACGCCCGTTGCGCCGCACGATC
CAGCGCGAGGTGGACAACCAGCTCTCGCGGCTGCTGCTCGACGGACGGGTCAAGGACGGCGACCGGGTGCGGGTGGAGGT
CGAGGACGGGCGGCTCGCGTTCCGCACCGAGCCGCCCGTCCCCACCCCGGAGCTATGA
ATGACCAGCGGCTACATCGGCCCGGAGGGCGACCCCTTCGGTGAATTCCTGGCCCGCTTCTTCGGCGGCCCCCGCCCCGG
CCCCCGCCAGATCAACATCGGCCAGCTCCTCAGCCAGCCCGCGAGGGAGCTGGTCCGCGGCGCCGCTCAGTACGCCGCCG
AGCACGGCAGCCGGGACCTGGACACCGAGCACCTGCTGCGCGCGGCCCTCGCGGCGGAGCCGACCCGGAGTCTGCTCAGC
CGGGCCGGCGCGGACCCCGACTCGCTGGCGACGGAGATCGACAAGCGGTCGGGGCCGGTGCAGCACCCGCCGGGCGAGAC
GCCCCCGCCGACCTCGCTGTCCCTGACCCCGGCCGCCAAGCGGGCCCTGCTGGACGCGCACGACCTGGCCCGTTCGCGGG
GGGCCGGGTACATCGGCCCGGAGCATGTGCTCAGCGCCCTCGCCGCGAACCCGGACTCCGCGGCCGGGCACATCCTCAAC
GCGGCCCGCTTCGCACCCGCCGGCCTTCCGCCGGAGACCGCCGAGGCCGCGCAGGCGCACCCGGAGCGACAGCGGCCGAC
CGGCACACCCACCCTGGACAAGTACGGCCGTGATCTCACGGAGCTCGCGCGCCAGGGCCGTATCGACCCGGTGATCGGGC
GGGACGACGAGATCGAGCAGACGATCGAGGTGCTGTCCCGGCGCGGCAAGAACAACCCGGTGCTGATCGGTGACGCCGGC
GTCGGCAAGACGGCCGTCGTGGAGGGGCTGGCGCAGCGCATCGCGGACGGGGACGTGCCGGACGTGCTGGACGGCCGCCG
GGTGGTCGCCCTGGACCTGACCGGGGTGGTCGCGGGCACCCGCTACCGGGGCGACTTCGAGGAACGCCTCAACACCATCG
TCGGCGAGATCCGCGCCCACTCCGACCAGCTGATCGTGTTCATCGACGAACTGCACACGGTGGTCGGCGCGGGCGGGGGC
GGCGAGGGCGGCTCGCTGGACGCGGGGAACATCCTCAAGCCGGCGCTGGCGCGCGGCGAACTGCACATCGTGGGCGCGAC
GACGCTGGAGGAGTACCGGCGCATCGAGAAGGACGCGGCGCTCGCCCGCCGCTTCCAGCCGATCCTGGTGCCCGAGCCGA
CCGTCCCGGACACCATCGAGATTTTGCGCGGGCTGCGCGACCGCTACGAGGCGCACCACCAGGTCCGTTACACCGACGAG
GCGCTGGTGGCGGCCGTACGGCTGTCGGACCGCTATCTCACCGACCGTCGGCTGCCCGACAAGGCGATCGACCTGATCGA
CCAGGCGGGGGCGCGGGTGCGCCTCGGTGCCCGGACGAAGGGCACGGACGTCCGGGCCATGGAGCGCGAGGCCGAGCAGC
TCGCCCGCGACAAGGACCAGGCGGTCGCCGACGAGCAGTACGAGCTGGCCACCCAACTGCGCGACCGGATCACCGAGTTG
AAGCAGCGCATCGCGGACACCTCCGGTGAGGAGGAGGTCGACGAGGGCCAGCATCTGGAGGTCACCGCGGAGGCCGTCGC
CGAGGTGGTGTCCCGGCAGACCGGGATCCCCGTCGCGAGCCTCACCCAGGAGGAGAAGGACCGGCTGCTGGGCCTGGAGG
AGCATCTGCACGAGCGGGTCGTGGGCCAGGAGGAGGCCGTACGGGTCGTCTCGGACGCGGTGCTGCGCTCACGGGCGGGC
CTGTCGAGCCCGGACCGGCCGATCGGCAGCTTCCTCTTCCTCGGCCCGACCGGTGTCGGCAAGACGGAGCTCGCGCGGGC
GCTCGCGGAGGCCCTGTTCGGCAGCGAGGAGCGGATGGTCCGGCTCGACATGAGCGAGTACCAGGAGCGGCACACGGTCA
GCAGGCTGGTGGGCGCCCCGCCCGGGTACGTCGGCCACGAGGAGGCCGGGCAGCTCACCGAGGTGGTGCGCAGGCACCCG
TACTCGCTGCTGCTGCTCGACGAGGTGGAGAAGGCGCACCCGGACGTCTTCAACATCCTGCTGCAGGTCCTCGACGACGG
GCGGCTGACCGACTCCCAGGGCCGCACGGTCGACTTCACCAACACGGTGATCGTGATGACGAGCAACCTGGGGTCGGAGG
CGATCGGCCGGCGCGGGGCGGGCATCGGCTTCGGGTCGGGCGGGGCGCAGGCCGACGAGGAGGCGCGGCGCGAGCAGATC
CTGCGGCCGCTGCGGGAGCACTTCCGCCCGGAGTTCCTCAACCGCATCGACGAGATCGTCGTCTTCCACCAGCTCACCGA
CGACCAACTGCGGCGGATCACCGACCTGTTGCTGGAGAAGACGCGGGAACTGCTGCAGGCGCAGGGCATCGGTGTGGAGT
TCTCGGCCGGGGCGGTGGACTGGCTGGCGGAGCGCGGCTACCAACCCGAGTACGGGGCACGCCCGTTGCGCCGCACGATC
CAGCGCGAGGTGGACAACCAGCTCTCGCGGCTGCTGCTCGACGGACGGGTCAAGGACGGCGACCGGGTGCGGGTGGAGGT
CGAGGACGGGCGGCTCGCGTTCCGCACCGAGCCGCCCGTCCCCACCCCGGAGCTATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
48.837 |
96.686 |
0.472 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.988 |
98.817 |
0.454 |
| clpC | Streptococcus pneumoniae Rx1 |
45.988 |
98.817 |
0.454 |
| clpC | Streptococcus pneumoniae D39 |
45.988 |
98.817 |
0.454 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
45.802 |
95.858 |
0.439 |
| clpC | Streptococcus mutans UA159 |
43.713 |
98.817 |
0.432 |
| clpC | Streptococcus thermophilus LMD-9 |
47.145 |
89.112 |
0.42 |
| clpC | Streptococcus thermophilus LMG 18311 |
46.746 |
89.112 |
0.417 |
| clpE | Streptococcus mutans UA159 |
52.997 |
75.03 |
0.398 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
51.811 |
75.148 |
0.389 |
| clpE | Streptococcus pneumoniae TIGR4 |
51.675 |
74.201 |
0.383 |
| clpE | Streptococcus pneumoniae Rx1 |
51.675 |
74.201 |
0.383 |
| clpE | Streptococcus pneumoniae D39 |
51.675 |
74.201 |
0.383 |
| clpE | Streptococcus pneumoniae R6 |
51.675 |
74.201 |
0.383 |