Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   L1A17_RS04775 Genome accession   NZ_CP090886
Coordinates   918338..919264 (+) Length   308 a.a.
NCBI ID   WP_000103701.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain NP7513     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 913338..924264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A17_RS04765 (L1A17_04765) amiA3 914796..916775 (+) 1980 WP_000742230.1 peptide ABC transporter substrate-binding protein Regulator
  L1A17_RS04770 (L1A17_04770) amiC 916842..918338 (+) 1497 WP_000759905.1 ABC transporter permease Regulator
  L1A17_RS04775 (L1A17_04775) amiD 918338..919264 (+) 927 WP_000103701.1 oligopeptide ABC transporter permease OppC Regulator
  L1A17_RS04780 (L1A17_04780) amiE 919273..920340 (+) 1068 WP_000159554.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  L1A17_RS04785 (L1A17_04785) amiF 920351..921277 (+) 927 WP_001291296.1 ATP-binding cassette domain-containing protein Regulator
  L1A17_RS04790 (L1A17_04790) - 921352..922678 (-) 1327 Protein_897 transposase -
  L1A17_RS04795 (L1A17_04795) treR 922833..923543 (-) 711 WP_000760673.1 trehalose operon repressor Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34662.82 Da        Isoelectric Point: 9.7939

>NTDB_id=645925 L1A17_RS04775 WP_000103701.1 918338..919264(+) (amiD) [Streptococcus pneumoniae strain NP7513]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVVKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=645925 L1A17_RS04775 WP_000103701.1 918338..919264(+) (amiD) [Streptococcus pneumoniae strain NP7513]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGTCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.442

100

0.834
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812