Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG852_RS05550 Genome accession   NZ_CP107772
Coordinates   1352009..1353004 (-) Length   331 a.a.
NCBI ID   WP_330351401.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1347009..1358004
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS05530 (OG852_05555) - 1347733..1348578 (-) 846 WP_133916033.1 PP2C family protein-serine/threonine phosphatase -
  OG852_RS05535 (OG852_05560) pgm 1348893..1350533 (-) 1641 WP_330347246.1 phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent) -
  OG852_RS05540 (OG852_05565) - 1350749..1351189 (+) 441 WP_330347247.1 PPOX class F420-dependent oxidoreductase -
  OG852_RS05545 (OG852_05570) - 1351266..1351931 (+) 666 WP_330347248.1 lysophospholipid acyltransferase family protein -
  OG852_RS05550 (OG852_05575) cytR 1352009..1353004 (-) 996 WP_330351401.1 LacI family DNA-binding transcriptional regulator Regulator
  OG852_RS05555 (OG852_05580) - 1353293..1354219 (+) 927 WP_133916029.1 sugar ABC transporter permease -
  OG852_RS05560 (OG852_05585) - 1354224..1355153 (+) 930 WP_133916028.1 carbohydrate ABC transporter permease -
  OG852_RS05565 (OG852_05590) - 1355254..1356594 (+) 1341 WP_133916027.1 sugar ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 331 a.a.        Molecular weight: 35373.99 Da        Isoelectric Point: 5.2385

>NTDB_id=645923 OG852_RS05550 WP_330351401.1 1352009..1353004(-) (cytR) [Streptomyces sp. NBC_00582]
MADVARLAGVSSQTVSRVSNGYAGVNEETRRQVLAAMKELGYRPNSAARALKRGEFRTIGVITFSLSSTGNVRTLEAIAT
SAAAEGYAVTLLPVALPTQDEVRGAFSRLEELAVDAVIVIMEVHLLDAATIMLPPYVQVLVVDSDAGDHYTVVDTDQAGG
SRTAVRHLLDLGHETVWHLGGPEDSFAAQRRTDAWRAALTDAGRTAPPLIRGDWSAESGYRAGLELAAREDCTAVFVAND
QMALGLLRALQERGRRVPEDVSVIGFDDIPEAGSFMPPLTTVHQDFAEVGRLCVRAVLRKMRDPDDGARGTTLVPTRLVV
RSSTAPPSGGS

Nucleotide


Download         Length: 996 bp        

>NTDB_id=645923 OG852_RS05550 WP_330351401.1 1352009..1353004(-) (cytR) [Streptomyces sp. NBC_00582]
ATGGCCGATGTGGCGCGCCTGGCGGGGGTCTCCTCGCAGACCGTCTCCCGGGTGTCCAACGGTTACGCCGGTGTGAACGA
GGAGACCCGGCGGCAGGTGCTCGCCGCGATGAAGGAGCTGGGCTACCGGCCCAACAGCGCGGCCCGCGCCCTCAAGCGCG
GGGAGTTCCGCACGATCGGTGTGATCACCTTCTCGCTGTCCTCCACGGGCAACGTCCGCACGCTGGAGGCCATCGCCACC
TCCGCCGCCGCCGAGGGGTACGCGGTGACGCTGCTGCCGGTCGCCCTGCCCACGCAGGACGAGGTGCGGGGCGCGTTCAG
CCGGCTCGAGGAGCTGGCGGTCGACGCGGTGATCGTGATCATGGAGGTGCATCTGCTGGACGCGGCGACGATCATGCTGC
CGCCGTATGTGCAGGTGCTCGTCGTCGACTCCGACGCGGGGGACCACTACACGGTCGTCGACACCGACCAGGCGGGCGGC
AGCCGCACCGCCGTACGGCATCTGCTCGACCTCGGACACGAGACGGTGTGGCATCTCGGCGGGCCCGAGGACTCCTTCGC
GGCGCAGCGGCGCACGGACGCCTGGCGGGCCGCGCTGACCGACGCGGGGCGTACGGCTCCGCCGCTGATCCGGGGGGACT
GGTCGGCGGAGTCGGGGTACCGGGCCGGGCTGGAGCTGGCCGCGCGCGAGGACTGCACCGCGGTGTTCGTCGCCAACGAC
CAGATGGCGTTGGGGCTGCTGCGGGCCTTGCAGGAGCGGGGGCGGCGGGTGCCCGAGGACGTGAGTGTCATCGGGTTCGA
CGACATTCCGGAGGCGGGGTCGTTCATGCCGCCGCTCACCACCGTGCACCAGGATTTCGCGGAGGTGGGGCGGCTGTGTG
TGCGGGCGGTGCTGCGGAAGATGCGGGATCCCGATGACGGGGCTCGGGGGACGACGCTCGTGCCCACGCGGTTGGTGGTG
CGGTCGAGTACGGCTCCGCCGTCGGGGGGCTCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(1-45)

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.38

100

0.366