Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG852_RS11830 Genome accession   NZ_CP107772
Coordinates   2727335..2728006 (-) Length   223 a.a.
NCBI ID   WP_133917074.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00582     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2722335..2733006
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG852_RS11810 (OG852_11825) - 2722805..2723953 (-) 1149 WP_133917070.1 ROK family glucokinase -
  OG852_RS11815 (OG852_11830) - 2724142..2724879 (-) 738 WP_208117370.1 GntR family transcriptional regulator -
  OG852_RS11820 (OG852_11835) - 2725009..2726013 (+) 1005 WP_330347908.1 Gfo/Idh/MocA family oxidoreductase -
  OG852_RS11825 (OG852_11840) - 2726104..2727288 (-) 1185 WP_330347909.1 cytochrome P450 -
  OG852_RS11830 (OG852_11845) vraR 2727335..2728006 (-) 672 WP_133917074.1 response regulator transcription factor Regulator
  OG852_RS11835 (OG852_11850) - 2728055..2729332 (-) 1278 WP_330347910.1 histidine kinase -
  OG852_RS11840 (OG852_11855) - 2729638..2730453 (-) 816 WP_133917076.1 MHYT domain-containing protein -
  OG852_RS11845 (OG852_11860) - 2730815..2731201 (-) 387 WP_330347911.1 ribonuclease domain-containing protein -
  OG852_RS11850 (OG852_11865) - 2731298..2731936 (-) 639 WP_330347912.1 dihydrofolate reductase family protein -
  OG852_RS11855 (OG852_11870) - 2732021..2732839 (-) 819 WP_208117368.1 AIM24 family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 23735.24 Da        Isoelectric Point: 5.1461

>NTDB_id=645928 OG852_RS11830 WP_133917074.1 2727335..2728006(-) (vraR) [Streptomyces sp. NBC_00582]
MTAIRLLLVDDDPLVRAGLSLMMGGADDIEIVGEAADGGEAEALVDRVRPDVVLMDIRMPAVDGLTATERLRRRQDAPQV
VVLTTFHADEQVLRALRAGAAGFVLKDTPPAEILDAVRRVAGGDPVLSPTVTRQLMDHAAGSAADTRRTRARERLAALGE
REREVAVAVGRGLSNAEIAAALFMSVATVKAHVSRILARLGLNNRVQIALLAYDAGLLDEDGH

Nucleotide


Download         Length: 672 bp        

>NTDB_id=645928 OG852_RS11830 WP_133917074.1 2727335..2728006(-) (vraR) [Streptomyces sp. NBC_00582]
ATGACTGCGATCCGACTCCTCCTCGTCGACGACGATCCGCTGGTGCGCGCCGGTCTGTCCCTCATGATGGGCGGCGCCGA
CGACATCGAGATCGTCGGCGAGGCCGCCGACGGCGGGGAGGCCGAGGCGCTCGTCGACCGTGTCCGGCCCGACGTCGTCC
TCATGGACATCCGGATGCCGGCCGTGGACGGCCTGACCGCCACGGAACGGCTGCGCCGCCGTCAGGACGCCCCGCAGGTC
GTGGTCCTCACCACCTTCCACGCCGACGAACAGGTGCTGCGCGCCCTGCGCGCGGGCGCCGCCGGTTTCGTCCTCAAGGA
CACCCCGCCCGCCGAGATCCTCGACGCCGTACGCCGGGTCGCGGGCGGCGACCCCGTGCTCTCGCCCACCGTCACCCGCC
AGCTCATGGACCACGCGGCCGGCTCGGCCGCCGACACCCGGCGCACCCGCGCGCGCGAGCGGCTCGCCGCCCTCGGGGAG
CGCGAGCGGGAGGTCGCCGTCGCGGTCGGCCGGGGTCTGTCCAACGCCGAGATCGCCGCCGCGCTCTTCATGAGCGTCGC
CACCGTCAAGGCCCACGTCTCCCGCATCCTGGCCCGGCTCGGCCTCAACAACCGTGTGCAGATCGCCCTGCTCGCGTACG
ACGCGGGTCTGCTCGACGAGGACGGGCACTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(157-212)

Response regulator receiver domain (Response_reg)

(7-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.073

97.758

0.372