Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   L1A16_RS10600 Genome accession   NZ_CP090885
Coordinates   2060678..2061436 (+) Length   252 a.a.
NCBI ID   WP_000410383.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain ND6401     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2055678..2066436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1A16_RS10570 (L1A16_10570) comE 2056274..2057026 (-) 753 WP_000866065.1 competence system response regulator transcription factor ComE Regulator
  L1A16_RS10575 (L1A16_10575) comD/comD1 2057023..2058348 (-) 1326 WP_015511364.1 competence system sensor histidine kinase ComD Regulator
  L1A16_RS10580 (L1A16_10580) comC/comC1 2058369..2058494 (-) 126 WP_000799689.1 competence-stimulating peptide ComC Regulator
  L1A16_RS10590 (L1A16_10590) rlmH 2058777..2059256 (-) 480 WP_000695929.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  L1A16_RS10595 (L1A16_10595) htrA 2059439..2060620 (+) 1182 WP_000681597.1 trypsin-like peptidase domain-containing protein Regulator
  L1A16_RS10600 (L1A16_10600) spo0J 2060678..2061436 (+) 759 WP_000410383.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 252 a.a.        Molecular weight: 29183.53 Da        Isoelectric Point: 9.0667

>NTDB_id=645878 L1A16_RS10600 WP_000410383.1 2060678..2061436(+) (spo0J) [Streptococcus pneumoniae strain ND6401]
MEKFEMISITDIQKNPYQPRKEFDREKLDELAQSIKENGVIQPIIVRQSPVIGYEILAGERRYRASLLAGLRSIPAVVKQ
ISDQEMMVQSIIENLQRENLNPIEEARAYESLVEKGFTHAEIADKMGKSRPYISNSIRLLSLPEQILSEVENGKLSQAHA
RSLVGLNKEQQDYFFQRIIEEDISVRKLETLLTEKKQKKQQKTNHFIQNEEKQLRKLLGLDVEIKLSKKDSGKIIISFSN
QEEYSRIINSLK

Nucleotide


Download         Length: 759 bp        

>NTDB_id=645878 L1A16_RS10600 WP_000410383.1 2060678..2061436(+) (spo0J) [Streptococcus pneumoniae strain ND6401]
ATGGAAAAATTTGAAATGATTTCTATCACAGATATACAAAAAAATCCCTATCAACCCCGAAAAGAATTTGATAGAGAAAA
GCTAGATGAACTAGCACAGTCTATCAAAGAAAATGGGGTCATTCAACCGATTATTGTTCGTCAATCTCCTGTTATTGGTT
ATGAAATCCTTGCAGGAGAGAGACGCTATCGGGCTTCACTTTTAGCTGGTCTACGGTCTATCCCAGCTGTTGTTAAACAG
ATTTCAGACCAAGAGATGATGGTCCAGTCCATTATTGAAAATTTACAGAGAGAAAATTTAAACCCAATAGAAGAAGCACG
CGCCTATGAATCTCTCGTAGAGAAAGGATTCACCCATGCTGAAATTGCAGATAAGATGGGCAAGTCTCGTCCATATATCA
GCAACTCCATTCGTTTACTTTCCTTGCCAGAACAGATTCTCTCAGAAGTAGAAAATGGCAAACTATCACAAGCCCATGCG
CGTTCCCTAGTTGGGTTAAATAAGGAACAACAAGACTATTTCTTTCAACGGATTATAGAAGAAGATATTTCTGTAAGGAA
GTTAGAAACTCTTCTGACAGAGAAAAAACAAAAGAAACAGCAAAAAACTAATCATTTCATACAAAATGAAGAAAAACAGT
TAAGAAAACTACTCGGATTAGATGTAGAAATTAAACTATCTAAAAAAGACAGTGGAAAAATCATTATTTCTTTTTCAAAT
CAAGAAGAATATAGTAGAATTATCAACAGCCTGAAATAA

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(144-192)

ParB/Sulfiredoxin domain (ParB_N)

(6-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

50.198

100

0.504